SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8360

Length: 396 nt

UniGene Fasta

>biog2_v2.0_unigene8360
ATGGGGAAATTATAACCTGTCGTCATTTCCTCCCTTTGGGGGAGACGAGTAGGCGAGTATCATGGATACAGTTGCTGCCACTACTGTCACTGCATGCATTTATAGAAACTCCTTTCCCAGAGCCCGTGGTGCATATGATATTAATTCCCAAGTAAAATCGGCAAAATTGGCTTCGGATTGAACCAATGTGGCCAATCTTTTTACAAGATTAGACATAAGAGCAATAATAGAACGACAGGAACCAGGGGATTCCAGGTCTATGCAATGGCGGATTCAGCAGCAGCCGTGGACCAGAAAACTGAGAAATTCGTGGTGCCCTCTGTGCAGAAGGCATGGATTTATAAGGAATATGGGGCTGCCAAGGACGTTTTGCAGTTGGACGATGGGGTCCCGGTA

Ace file of the UniGene biog2_v2.0_unigene8360

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2360	4/5
SustainPine v2.0	sp_v2.0_unigene66385	1/5

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SHB0_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	quinone oxidoreductase-like protein chloroplastic-like	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADPH:quinone reductase.	EC:1.6.5.5	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	pteridine-containing compound metabolic process	GO:0042558	Biological Process	86%
Blast2go	response to cold	GO:0009409	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	NADPH:quinone reductase activity	GO:0003960	Molecular Function	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	86%
Blast2go	stromule	GO:0010319	Cellular Component	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	thylakoid	GO:0009579	Cellular Component	86%
Blast2go	apoplast	GO:0048046	Cellular Component	86%
Blast2go	2-alkenal reductase (NADP+) activity	GO:0035798	Biological Process	86%
Blast2go	enone reductase activity	GO:0035671	Biological Process	86%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVP5

Fln msg: Overlapping hits, possible frame ERROR between 169 and 154, Distance to subject end: 286 aas, your sequence is shorter than subject: 112 - 398

Fln protein: MDTVAATTVTACIYRNSFPRARGAYDINSQxxxxxxxFGLNQCGQSFYKIRHKSNNRTTGTRGFQVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPV

Protein Length: 113

Fln nts: ATGGGGAAATTATAACCTGTCGTCATTTCCTCCCTTTGGGGGAGACGAGTAGGCGAGTATC_-_ATGGATACAGTTGCTGCCACTACTGTCACTGCATGCATTTATAGAAACTCCTTTCCCAGAGCCCGTGGTGCATATGATATTAATTCCCAAxxxxxxxxxxxxxxxxxxxxxTTCGGATTGAACCAATGTGGCCAATCTTTTTACAAGATTAGACATAAGAGCAATAATAGAACGACAGGAACCAGGGGATTCCAGGTCTATGCAATGGCGGATTCAGCAGCAGCCGTGGACCAGAAAACTGAGAAATTCGTGGTGCCCTCTGTGCAGAAGGCATGGATTTATAAGGAATATGGGGCTGCCAAGGACGTTTTGCAGTTGGACGATGGGGTCCCGGTA

Fln Alignment:

biogeco2_mira_c3161___MDTVAATTVTACIYRNSFPRARGAYDINSQVxxxxxGFGLNQCGQSFYKIRHKSNNRTTGTRGFQVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPV
A9NVP5_________________MDTFAATTITARTCINSFPRAGGADDVQSHVxxxxxGFGWNQRGQSSYKLRHKSSNRTRGSRGVSVYAMADSAAAVDQKTEKFVVPSVQKAWIYKEYGAAKDVLQLDDGVPV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
51			33	66	0.997452
52	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain