SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7927

Length: 386 nt

UniGene Fasta

>biog2_v2.0_unigene7927
TAGCATCATTATTTCCCTATAATATCGATATAAAGCCCCCAGAAGACAATGCACACCTTGTCAGCTGGAAGAGTCAGCTTGAAGAAGATTTGAAAGCTATTCAGTTTCAGGACAATAGGAACCATATATCAGAGATTCTTGCAGCAAATGATCTTGAATGTGATGATTTGGAATCCATTTGTTTTTCGGATTCGGAGCTTCTTAGTACTTATATGGAGGAAATTGTTGTGTCTGCCATTTCTCACCATCTAATGAATACGAAAAATCCAGAGTACAGAAATGGAAGATTGGTTATTTCATCTAAAAGCTTAGCGCATGGGCTGAGTATATTCCAGGTAGGCAAGGCAGAAACAAAGCTACGCTGCCAATGTTCAATGAGGATTCTT

Ace file of the UniGene biog2_v2.0_unigene7927

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2882	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIQ4_RICCO	-	-	70%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	74%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9N345

Fln msg: Distance to subject end: 378 aas, your sequence is shorter than subject: 128 - 793

Fln protein: ASLFPYNIDIKPPEDNAHLVSWKSQLEEDLKAIQFQDNRNHISEILAANDLECDDLESICFSDSELLSTYMEEIVVSAISHHLMNTKNPEYRNGRLVISSKSLAHGLSIFQVGKAETKLRCQCSMRIL

Protein Length: 129

Fln nts: TAGCATCATTATTTCCCTATAATATCGATATAAAGCCCCCAGAAGACAATGCACACCTTGTCAGCTGGAAGAGTCAGCTTGAAGAAGATTTGAAAGCTATTCAGTTTCAGGACAATAGGAACCATATATCAGAGATTCTTGCAGCAAATGATCTTGAATGTGATGATTTGGAATCCATTTGTTTTTCGGATTCGGAGCTTCTTAGTACTTATATGGAGGAAATTGTTGTGTCTGCCATTTCTCACCATCTAATGAATACGAAAAATCCAGAGTACAGAAATGGAAGATTGGTTATTTCATCTAAAAGCTTAGCGCATGGGCTGAGTATATTCCAGGTAGGCAAGGCAGAAACAAAGCTACGCTGCCAATGTTCAATGAGGATTCTT

Fln Alignment:

biogeco2_mira_c2443___ASLFPYNIDIKPPEDNAHLVSWKSQLEEDLKAIQFQDNRNHISEILAANDLECDDLESICFSDSELLSTYMEEIVVSAISHHLMNTKNPEYRNGRLVISSKSLAHGLSIFQVGKAETK
B9N345_________________AMLFPYNIEIKPPEDETHLVSWKAQLEEDMKKIQFQDNKNHIAEVLAANDIECDGLSSICHADTMVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLLISSKSLSHGLSIFQEGKSDGK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
261	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain