SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7781

Length: 343 nt

UniGene Fasta

>biog2_v2.0_unigene7781
ATTTGCGACATTAGATGAAGACGAAGTGAATCAGATCAATACACCTCAATATTCAGCAATGGTCGCAGGCTATGAACTACCACCAAATATTGCAATCATTACACTTCAGGAATTGGAGGATCAGCATACATTGTTGCGTCTGGCACATCTTTATGAGGTCGGAGAAAGTGACAAATTTTCAAGCATTGCAAGAGTTGATCTTCAAAGTCTATTTTCAAGACGCAAGATTAAAGAAATTGTGGAGCTCAACCTCTCAGCAGTTCAGAATAAGTCAGAAATGAAGTCACTGGATTGGCAAGTTGAAGGAGAAGAGAATATTTTCATCAAGCCCTCTAAGAGAAAC

Ace file of the UniGene biog2_v2.0_unigene7781

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1996	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-mannosidase [Arabidopsis thaliana] emb\|CAA66821.1\| alpha-mannosidase [Arabidopsis thaliana] emb\|CAA72432.1\| alpha-mannosidase precursor [Arabidopsis thaliana] dbj\|BAB01735.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AAK62592.1\| AT3g26720/MLJ15_12	-	-	46%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	50%
Blast2go	protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	64%
Blast2go	binding	GO:0005488	Molecular Function	64%
Blast2go	mannosidase activity	GO:0015923	Molecular Function	64%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	64%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	64%
Blast2go	apoplast	GO:0048046	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SGT5

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 114 - 1090

Fln protein: FATLDEDEVNQINTPQYSAMVAGYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARVDLQSLFSRRKIKEIVELNLSAVQNKSEMKSLDWQVEGEENIFIKPSKRN

Protein Length: 115

Fln nts: ATTTGCGACATTAGATGAAGACGAAGTGAATCAGATCAATACACCTCAATATTCAGCAATGGTCGCAGGCTATGAACTACCACCAAATATTGCAATCATTACACTTCAGGAATTGGAGGATCAGCATACATTGTTGCGTCTGGCACATCTTTATGAGGTCGGAGAAAGTGACAAATTTTCAAGCATTGCAAGAGTTGATCTTCAAAGTCTATTTTCAAGACGCAAGATTAAAGAAATTGTGGAGCTCAACCTCTCAGCAGTTCAGAATAAGTCAGAAATGAAGTCACTGGATTGGCAAGTTGAAGGAGAAGAGAATATTTTCATCAAGCCCTCTAAGAGAAAC

Fln Alignment:

biogeco2_mira_c2161___FATLDEDEVNQINTPQYSAMVAGYELPPNIAIITLQELEDQHTLLRLAHLYEVGESDKFSSIARVDLQSLFSRRKIKEIVELNLSAVQNKSEMKSLDWQVEGEENI
A9SGT5_________________FSVLEDGNKEVLHSPKFSAFKSGYELPQNVALITLQELDDRQVLLRLANIFEVDESEQLSKMATVYLPDIFPNLKIKDVVELSLSANQKKSHMKKLTWTVEGNEKV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
166	66			33	0.997452
167	75		25		0.996476
169			25	75	0.996475
202		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain