SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7675

Length: 424 nt

UniGene Fasta

>biog2_v2.0_unigene7675
AGAGATGGAGATGTTGAAACTTCAGATTGTGGGTGCCTTGCCTTATGCGTACACCTATGATGGTGGGACTTTTGCTGAGTGTTGTGCATTGCCTCCTTTGGACCCGAATGGAAATAATGATGATCAGCAAGGAGTCCCTTTGGGCATCTCGTCTGTGTTCAAGACTGGTGATATCAATTCACTTATTTGAGAGCTGATCTAGTTGAAAGTCCACCCCAGCAATTCGTAAATTATAATCACCGAGGGACATTTTCCTTTCTTTCCTGTAAATTGTATGTTGTCTTAAATAACGTTTATATTATTTGGATCCTAACGTTTTCAATTTCTTTTCGGACCGTTCATAAATTATATTCCCATGTTGGAGAAGTGGGACCGACCTTGTGGGAATTTGACTGTTCAAAATTTGTATCCCCATATTGGAGAA

Ace file of the UniGene biog2_v2.0_unigene7675

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17435	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglyceromutase [Chlamydophila abortus S26/3] sp\|Q5L4Y3.1\|GPMA_CHLAB RecName: Full=2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Short=BPG-dependent PGAM; Short=PGAM; Short=Phosphoglyceromutase; Short=dPGM emb\|CAH64312.1\| putative phosph	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	phosphoglycerate mutase	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglucomutase.	EC:5.4.2.2	-	0.0	63%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	63%
Blast2go	Pentose phosphate pathway	00030	63%
Blast2go	Galactose metabolism	00052	63%
Blast2go	Purine metabolism	00230	63%
Blast2go	Starch and sucrose metabolism	00500	63%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	63%
Blast2go	Metabolic pathways	01100	63%
Blast2go	Biosynthesis of secondary metabolites	01110	63%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	63%
Blast2go	starch biosynthetic process	GO:0019252	Biological Process	63%
Blast2go	response to nitrate	GO:0010167	Biological Process	63%
Blast2go	detection of gravity	GO:0009590	Biological Process	63%
Blast2go	phosphoglucomutase activity	GO:0004614	Molecular Function	63%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	63%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	63%
Blast2go	stromule	GO:0010319	Cellular Component	63%
Blast2go	apoplast	GO:0048046	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Phosphoglycerate mutase 1	IPR005952	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0J9

Fln msg: your sequence is shorter than subject: 63 - 320

Fln protein: EMEMLKLQIVGALPYAYTYDGGTFAECCALPPLDPNGNNDDQQGVPLGISSVFKTGDINSLI*

Protein Length: 64

Fln nts: AGAGATGGAGATGTTGAAACTTCAGATTGTGGGTGCCTTGCCTTATGCGTACACCTATGATGGTGGGACTTTTGCTGAGTGTTGTGCATTGCCTCCTTTGGACCCGAATGGAAATAATGATGATCAGCAAGGAGTCCCTTTGGGCATCTCGTCTGTGTTCAAGACTGGTGATATCAATTCACTTATTTGA___GAGCTGATCTAGTTGAAAGTCCACCCCAGCAATTCGTAAATTATAATCACCGAGGGACATTTTCCTTTCTTTCCTGTAAATTGTATGTTGTCTTAAATAACGTTTATATTATTTGGATCCTAACGTTTTCAATTTCTTTTCGGACCGTTCATAAATTATATTCCCATGTTGGAGAAGTGGGACCGACCTTGTGGGAATTTGACTGTTCAAAATTTGTATCCCCATATTGGAGAA

Fln Alignment:

biogeco2_mira_c1935___EMEMLKLQIVGALPYAYTYDGGTFAECCALPPLDPNGNNDDQQGVPLGISSVFKTGDINSLI
A9P0J9_________________DMEMLKLQIVTAMPYAYTYDGGTFAECCALPPLNPNRNDEDHQGVPLGISSVFKTGDVNSLI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
137	25	75			0.99649
138		75		25	0.99649
139		75	25		0.996486
140			25	75	0.996481
141			25	75	0.996481
349	66		33		0.997467

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain