SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7643

Length: 452 nt

UniGene Fasta

>biog2_v2.0_unigene7643
GTTTGTCGGGATGCATCCATGAATGGCATGAGGCGAAAGATTGCAGGGAAGACTCGTGATGAGATAAAGAATATGTCAAAGGATGAGATTGCGAAAGATCCCATTGCCATGTGTGATTTTGAAGAAGCCCTTAGCAAAGTTCAACGCAGTGTTTCTGCTGCTGATATAGAGCGCCATGAAAAATGGTTTGCAGAGTTTGGTTCTGCATAGGGTTGAATGCAGTGAAGCTTTTCTTCGCTCATCTGTAATCGTGTTGGCAGTATTCTGGTCATGTAATGTACTATTTATTTGCTTTATGAATGTTAATTCTTATCCTCTCTTTCCAAGGTTAGCCATTTGCCAGATGCAACAAAATATTCACGCATCCTTTTGCACAAGGGAAACAAGAAATCAAAAACTCAGTAGAGAAATAGACATACCAGCAATAGATGCGGGGAATTGGCCATGCAAGC

Ace file of the UniGene biog2_v2.0_unigene7643

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3560	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	katanin [Gossypium hirsutum]	-	-	76%
FL-Next	sp=Katanin p60 ATPase-containing subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	82%
Blast2go	katanin p60 atpase-containing subunit	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	81%
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	81%
Blast2go	trichome branching	GO:0010091	Biological Process	81%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	katanin complex	GO:0008352	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SEX2

Fln msg: your sequence is shorter than subject: 70 - 523

Fln protein: VCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPIAMCDFEEALSKVQRSVSAADIERHEKWFAEFGSA*

Protein Length: 71

Fln nts: GTTTGTCGGGATGCATCCATGAATGGCATGAGGCGAAAGATTGCAGGGAAGACTCGTGATGAGATAAAGAATATGTCAAAGGATGAGATTGCGAAAGATCCCATTGCCATGTGTGATTTTGAAGAAGCCCTTAGCAAAGTTCAACGCAGTGTTTCTGCTGCTGATATAGAGCGCCATGAAAAATGGTTTGCAGAGTTTGGTTCTGCATAG___GGTTGAATGCAGTGAAGCTTTTCTTCGCTCATCTGTAATCGTGTTGGCAGTATTCTGGTCATGTAATGTACTATTTATTTGCTTTATGAATGTTAATTCTTATCCTCTCTTTCCAAGGTTAGCCATTTGCCAGATGCAACAAAATATTCACGCATCCTTTTGCACAAGGGAAACAAGAAATCAAAAACTCAGTAGAGAAATAGACATACCAGCAATAGATGCGGGGAATTGGCCATGCAAGC

Fln Alignment:

biogeco2_mira_c1867___VCRDASMNGMRRKIAGKTRDEIKNMSKDEIAKDPIAMCDFEEALSKVQRSVSAADIERHEKWFAEFGSA
Q9SEX2_________________VCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA

SNPs (tot: 4)

Position	C %	G %	T %	Probability
199	25		75	0.996473
200		75	25	0.996473
237	60		40	1.0
321	40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain