SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7406

Length: 562 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7406
ACCTCAGAGAAACGAATATCTTGCAACTCTCAGTCCACGGCGGAAACTCGGTAGTCATGCAGGCCGCGCAATGTGCAGTGACTTCGTACTCCTTTTCTCCTTCGAAGTCTCCCAGGGCTGACAACCGCGGGGTCTGCAATGGTGGCGGGCCTTCTCGTCTCTCCTTCTGCGGTCTGCGCAAGGAAATCTTCGGAGTACCTGCTGAGCGATGCTTCAGAAGAGCGGCGTTGGCTGCCCGGCCAACGGGAAGGCCAGGATTGCAGGGATATAGAGTGATGGCTTCAGCTTCAGATAACGGAAGCCACGTCACGGCGTTCGACTACGATTTGATTATCATCGGAGCCGGCGTCGGTGGCCATGGAGCTGCTCTTCATGCAGTCGAAAAGGGTCTAAAAACTGCAGTTATTGAAGGAGATGTCATTGGAGGTACTTGTGTCAATAGAGGTTGTGTTCCTTCTAAAGCACTTCTTGCTGTGAGTGGGCGCATGCGTGAACTTCAGAGTGAACACCATCTGAAGGCAATGGGCATACAGGTTGCAGCAGCAGAGTATGACAGACAGTC

Ace file of the UniGene biog2_v2.0_unigene7406 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14035	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	lipoamide dehydrogenase 1 [Arabidopsis thaliana] gb\|AEE75888.1\| lipoamide dehydrogenase 1 [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	dihydrolipoyl dehydrogenase-like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydrolipoyl dehydrogenase.	EC:1.8.1.4	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	89%
Blast2go	Citrate cycle (TCA cycle)	00020	89%
Blast2go	Glycine, serine and threonine metabolism	00260	89%
Blast2go	Valine, leucine and isoleucine degradation	00280	89%
Blast2go	Pyruvate metabolism	00620	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	electron transport chain	GO:0022900	Biological Process	89%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	89%
Blast2go	acetyl-CoA biosynthetic process from pyruvate	GO:0006086	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	89%
Blast2go	dihydrolipoyl dehydrogenase activity	GO:0004148	Molecular Function	89%
Blast2go	disulfide oxidoreductase activity	GO:0015036	Molecular Function	89%
Blast2go	nucleolus	GO:0005730	Cellular Component	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Mercuric reductase	IPR000815	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	IPR012999	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKS4

Fln msg: Distance to subject end: 407 aas, your sequence is shorter than subject: 168 - 576

Fln protein: MQAAQCAVTSYSFSPSKSPRADNRGVCNGGGPSRLSFCGLRKEIFGVPAERCFRRAALAARPTGRPGLQGYRVMASASDNGSHVTAFDYDLIIIGAGVGGHGAALHAVEKGLKTAVIEGDVIGGTCVNRGCVPSKALLAVSGRMRELQSEHHLKAMGIQVAAAEYDRQ

Protein Length: 169

Fln nts: ACCTCAGAGAAACGAATATCTTGCAACTCTCAGTCCACGGCGGAAACTCGGTAGTC_-_ATGCAGGCCGCGCAATGTGCAGTGACTTCGTACTCCTTTTCTCCTTCGAAGTCTCCCAGGGCTGACAACCGCGGGGTCTGCAATGGTGGCGGGCCTTCTCGTCTCTCCTTCTGCGGTCTGCGCAAGGAAATCTTCGGAGTACCTGCTGAGCGATGCTTCAGAAGAGCGGCGTTGGCTGCCCGGCCAACGGGAAGGCCAGGATTGCAGGGATATAGAGTGATGGCTTCAGCTTCAGATAACGGAAGCCACGTCACGGCGTTCGACTACGATTTGATTATCATCGGAGCCGGCGTCGGTGGCCATGGAGCTGCTCTTCATGCAGTCGAAAAGGGTCTAAAAACTGCAGTTATTGAAGGAGATGTCATTGGAGGTACTTGTGTCAATAGAGGTTGTGTTCCTTCTAAAGCACTTCTTGCTGTGAGTGGGCGCATGCGTGAACTTCAGAGTGAACACCATCTGAAGGCAATGGGCATACAGGTTGCAGCAGCAGAGTATGACAGACAGTC

Fln Alignment:

biogeco2_mira_c1361___MQAAQCAVTSYSFSPSKSPRADNRGVCNGGGPSRLSFCGLRKEIFGVPAERCFRRAALAARPTGRPGLQGYRVMASASDNGSHVTAFDYDXXXXXXXXXXXXXXXXXVEKGLKTAVIEGDVIGGTCVNRGCVPSKALLAVSGRMRELQSEHHLKAMGIQVAAAEYDRQ
B8LKS4_________________MQAAQCVVTSYSFTPSKFPRAGNRGVCNGGGPSQLSFCGLRKEIFGVPAERCFRRVALAARPTRRAGMQGYRVTASASDNGSHVTAFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVIGGTCVNRGCVPSKALLAVSGRMRELQSEHHLKSMGIQVAAAGYDRQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
252	20		80		0.995493
281		40		60	1.0
365	75		25		0.996473
389			75	25	0.996473
402	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain