SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7374

Length: 516 nt

UniGene Fasta

>biog2_v2.0_unigene7374
TGCAGTTGAAAAACCAAGTGCTGCCAAAGGCAATATTTTCAATGCTGTTCGTGATCGAGCTGTTACATTTGATGGACTCGTCAAACTTTGTGCTAAAGCTGCTGGCAGAGAAACTGCTGATATTGTTCATTATGACCCAAAATCTATTGGCATCGATGCCAAGAAAGCATTTCCCTTCAGGAACATGCATTTTATGCAGAACCAAGAGCAGCAAAGGAGATATTGGGGTGGCAAAGCTCAACAAACCTTTCCCAGGACTTGAAAGAGCGTTTTGAGGAGTATGTTGCAATTGGAAGAGACAAGAAAGACATCAAGTTTGAACTGGATGACAAGATCGTTTTGGAATCTTCCAGGGTAGCTGTGCCTGCCACTGTGTGACCTAAATAATTTATCAAGATATAATTCCTTCCCTTTTTGCATTGACTCACCGGTTTACTCTATGCCATCTGCACTGATGTCTGAGCTCTTCCATGTTACTCTTTGAAATATCATTTATCCCAAGTGTTGTATATCTGT

Ace file of the UniGene biog2_v2.0_unigene7374

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2158	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	mRNA-binding protein precursor [Nicotiana tabacum]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	mrna binding protein precursor-like	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	81%
Blast2go	mRNA binding	GO:0003729	Molecular Function	81%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	81%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	81%
Blast2go	catalytic activity	GO:0003824	Molecular Function	81%
Blast2go	plastoglobule	GO:0010287	Cellular Component	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	thylakoid	GO:0009579	Cellular Component	81%
Blast2go	apoplast	GO:0048046	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL40

Fln msg: Overlapping hits, possible frame ERROR between 256 and 136, your sequence is shorter than subject: 126 - 423

Fln protein: AVEKPSAAKGNIFNAVRDRAVTFDGLVKLCAKAAGRETADIVHYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKERFEEYVAIGRDKKDIKFELDDKIVLESSRVAVPATV*

Protein Length: 127

Fln nts: TGCAGTTGAAAAACCAAGTGCTGCCAAAGGCAATATTTTCAATGCTGTTCGTGATCGAGCTGTTACATTTGATGGACTCGTCAAACTTTGTGCTAAAGCTGCTGGCAGAGAAACTGCTGATATTGTTCATTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGAAAGAGCGTTTTGAGGAGTATGTTGCAATTGGAAGAGACAAGAAAGACATCAAGTTTGAACTGGATGACAAGATCGTTTTGGAATCTTCCAGGGTAGCTGTGCCTGCCACTGTGTGACCTAAATAATTTATCAAGATATAATTCCTTCCCTTTTTGCATTGACTCACCGGTTTACTCTATGCCATCTGCACTGATGTCTGAGCTCTTCCATGTTACTCTTTGAAATATCATTTATCCCAAGTGTTGTATATCTGT

Fln Alignment:

biogeco2_mira_c1286___AVEKPSAAKGNIFNAVRDRAVTFDGLVKLCAKAAGRETADIVHYDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLKERFEEYVAIGRDKKDIKFELDDKIVLESSRVAVPATV
B8LL40_________________AVEKPTAANGNVFNAVCDRAVTFDGLTKLCAKAAGRETAAIVHYDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLKERFEEYVASGRDKKDIKFELDDKIILESSRAAEPATV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
176	20	80			0.995494
179			20	80	0.995493
180		80	20		0.995493
252			33	66	1.0
303		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain