SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6374

Length: 622 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6374 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3429	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, putative n=1 Tax=Ricinus communis RepID=B9T7S7_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	59%
Blast2go	2-keto-3-deoxy-l-rhamnonate aldolase-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	cellular aromatic compound metabolic process	GO:0006725	Biological Process	68%
Blast2go	carbon-carbon lyase activity	GO:0016830	Molecular Function	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldehyde-lyase domain	IPR005000	-	0.0	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
110		20		80	0.995493
242		33		66	1.0
249	11	88			0.923564
452		88		11	0.923564
453	88		11		0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain