SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6231

Length: 498 nt

UniGene Fasta

>biog2_v2.0_unigene6231
ATGGGGACCACCTACAGCGCCATTTCGTCTTTCGTTTTTGTGTAGCATTTGCTTGCCTTTGCCTTTGCCTTCACCTAGTTCAGGCGTGAGAATGGCTTCAGCTGTGCAATGTGCCGCCCTGAGCAGCCGCCGCGAGCTTGAGAACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCCAAGTCGGAACTGAGTGCCCTGATTTCGGAGGCGGAGATTGAAGGGGTGATGAAGGAGGTGGACTCCAATAAAGACGGATTCATCAACTTCGACGAGTTGGTGGAGGCCAACTCCAAGAACCTCAACGCCGCCCGTCTCATGCGAAACTCCGCTTCAGCTGTGCAATGTGCCGCCCTGCCCGGCCGCCTGGAGCTGGAGGACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCGAAATCGGAACTGAGCGCCATCCTCAAGTGCAGCTGTAGTGAGGAGGAGATTGATGGTGTGATGAAGGA

Ace file of the UniGene biog2_v2.0_unigene6231

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15670	1/30
SustainPine v2.0	sp_v2.0_unigene17033	9/30
SustainPine v2.0	sp_v2.0_unigene24649	5/30
SustainPine v2.0	sp_v2.0_unigene24671	12/30
SustainPine v2.0	sp_v2.0_unigene83627	1/30

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	84%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	75%
Blast2go	polcalcin	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	56%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	56%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 135 - 166

Fln protein: MASAVQCAALSSRRELENVFRKFDTNGDGKISKSELSALISEAEIEGVMKEVDSNKDGFINFDELVEANSKNLNAARLMRNSASAVQCAALPGRLELEDVFRKFDTNGDGKISKSELSAILKCSCSEEEIDGVMK

Protein Length: 136

Fln nts: ATGGGGACCACCTACAGCGCCATTTCGTCTTTCGTTTTTGTGTAGCATTTGCTTGCCTTTGCCTTTGCCTTCACCTAGTTCAGGCGTGAGA_-_ATGGCTTCAGCTGTGCAATGTGCCGCCCTGAGCAGCCGCCGCGAGCTTGAGAACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCCAAGTCGGAACTGAGTGCCCTGATTTCGGAGGCGGAGATTGAAGGGGTGATGAAGGAGGTGGACTCCAATAAAGACGGATTCATCAACTTCGACGAGTTGGTGGAGGCCAACTCCAAGAACCTCAACGCCGCCCGTCTCATGCGAAACTCCGCTTCAGCTGTGCAATGTGCCGCCCTGCCCGGCCGCCTGGAGCTGGAGGACGTGTTCCGCAAGTTCGACACCAACGGCGACGGCAAAATATCGAAATCGGAACTGAGCGCCATCCTCAAGTGCAGCTGTAGTGAGGAGGAGATTGATGGTGTGATGAAGGA

Fln Alignment:

Contig6231___ASAVQCAALSSRRELENVFRKFDTNGDGKISKSELSALI----SEAEIEGVMKEVDSNKDGFINFDELVEANSKNLNAARLMRNSASA
O22429_________________ASAVQCATLPGRLELEDVFRKFDTNGDGKISKSELSAILKCRSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNAARLMLGLASA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
59		25	75		0.996473
60		75	25		0.996473
109		25		75	0.996473
147	75		25		0.996473
200	66		33		0.997452
298		88	11		0.923564
317		66		33	1.0
320		77		22	0.999999
324	11	55	22		0.999999
329		66		33	1.0
336	62	12	25		1.0
338		87		12	0.992554
347	37	37	25		1.0
355	83		16		0.994512
374		33	66		0.997452
376		66	33		0.997452
379		66		33	0.997452
380		33		66	0.997452
397		25	75		0.996473
457		75		25	0.996473
469		66	33		0.997452
471		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
53	71	TTGCCT TTGCCT TTGCCT T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain