SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6218

Length: 460 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene6218
ATAAAAACCCTAGCGAAGGTGGTCGGAAGTGAAGAGGAAGCTAAAAAAAGGATTTATGCTTTGTCTACAACAACCTATACGGGGTTTCAGGCCCAGATATCAGAGGAACTCTCCGAAAAAATGAAGGGCCTGCCGGGCGTTGTCTGGGTGTTGCCTGATTCATATATTGATCCTGTAAATAAGGAGTATGGAGGAGATAAGTACATCAATGGGGTAATTATACCAGACACTCGGGTATATAATAACAGGTCTAGTGGAAGGTACAATGACAGGCCAAGAAACCGCAATCGCAGAGATTCCATGCCTGTTGAACGAAGAGACCCAATGCCCATGGATGGGAGGGGTGGTATGCAGGGAGATAGGAGAGATTTCAGGCCACCTCTGGAAGGAAGAGGTCCAATGCCAGGTGGTCAACAAGATTACAACAGACCTCAACAAGATTACAACCGACCTCAAGATT

Ace file of the UniGene biog2_v2.0_unigene6218 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17451	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DAG protein, putative [Arabidopsis thaliana]	-	-	2.0e-40	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	dag protein	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	64%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	YLP motif	IPR004019	-	0.0	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVN0

Fln msg: Distance to subject end: 227 aas, your sequence is shorter than subject: 153 - 525

Fln protein: IKTLAKVVGSEEEAKKRIYALSTTTYTGFQAQISEELSEKMKGLPGVVWVLPDSYIDPVNKEYGGDKYINGVIIPDTRVYNNRSSGRYNDRPRNRNRRDSMPVERRDPMPMDGRGGMQGDRRDFRPPLEGRGPMPGGQQDYNRPQQDYNRPQD

Protein Length: 154

Fln nts: ATAAAAACCCTAGCGAAGGTGGTCGGAAGTGAAGAGGAAGCTAAAAAAAGGATTTATGCTTTGTCTACAACAACCTATACGGGGTTTCAGGCCCAGATATCAGAGGAACTCTCCGAAAAAATGAAGGGCCTGCCGGGCGTTGTCTGGGTGTTGCCTGATTCATATATTGATCCTGTAAATAAGGAGTATGGAGGAGATAAGTACATCAATGGGGTAATTATACCAGACACTCGGGTATATAATAACAGGTCTAGTGGAAGGTACAATGACAGGCCAAGAAACCGCAATCGCAGAGATTCCATGCCTGTTGAACGAAGAGACCCAATGCCCATGGATGGGAGGGGTGGTATGCAGGGAGATAGGAGAGATTTCAGGCCACCTCTGGAAGGAAGAGGTCCAATGCCAGGTGGTCAACAAGATTACAACAGACCTCAACAAGATTACAACCGACCTCAAGATT

Fln Alignment:

Contig6218___IKTLAKVVGSEEEAKKRIYALSTTTYTGFQAQISEELSEKMKGLPGVVWVLPDSYIDPVNKEYG-GDKYINGVIIPDTRVYNNRSSGXXXXXXXXXXXXDSMPVE------------XXXXXXXXXXXXXXXXXXDFRP---------------PLEGRGPMPGGQQDYNRP----QQDYNRPQD
A9NVN0_________________VKTLANVVGSEEEAKKRIYALSTTTYTGFMCEISEELSEKIKKEPGVEWVLPDSYGDPIKKEYGVGDKYINGVIIPDTRVY-NRPTG---RDRPRNRRRDSMPIERRDVQTSRDPLPTLGGRDNIQGNSVPGDQRDFRPTESRDSMQGGQRVYRPMDGRATVAGDRQDY-RPLPGDRQDYRPPVD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
341		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain