SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5831

Length: 380 nt

UniGene Fasta

>biog2_v2.0_unigene5831
AGTCAGCATTGATAAAAGCATATAAAAGGCCTATTCCCAGCATATACAACAATGTTATACAAGAGTTAATAGTACAGCAACACCTGATGCGTTACAAGAGGACATATCAGTATGATGCAGTATTTGCACTAGGTTTTGTCAGTGTCTATGACCAACTTATGGATGGATACCCCAGTGATGGTGACCGCGAAGCAATCTTCAGAGCGTACATATATGCATTGAAAGAGGATCCTGAACAGTACAGGAGTGATGCCAAAAAGCTGGAAGAATGGGCTGGCTCACAGGATGCAAAGTCTATTGTTGAATTTCAATCTAGAGATGGAGAGGTTGAGGGAATATTGAAAGACATTTCTGAACGAGCGAGGGAAAAGAAAATTTAG

Ace file of the UniGene biog2_v2.0_unigene5831

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3746	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ThylakoidFormat domain containing protein	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	chloroplast-localized ptr -binding protein1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	87%
Blast2go	protein import into chloroplast thylakoid membrane	GO:0045038	Biological Process	87%
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	87%
Blast2go	photosystem II assembly	GO:0010207	Biological Process	87%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	87%
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	plastid outer membrane	GO:0009527	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	plastid inner membrane	GO:0009528	Cellular Component	87%
Blast2go	stromule	GO:0010319	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II Psp29, biogenesis	IPR017499	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPI7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 92 aas, your sequence is shorter than subject: 126 - 304

Fln protein: SALIKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDREAIFRAYIYALKEDPEQYRSDAKKLEEWAGSQDAKSIVEFQSRDGEVEGILKDISERAREKKI*

Protein Length: 127

Fln nts: AGTCAGCATTGATAAAAGCATATAAAAGGCCTATTCCCAGCATATACAACAATGTTATACAAGAGTTAATAGTACAGCAACACCTGATGCGTTACAAGAGGACATATCAGTATGATGCAGTATTTGCACTAGGTTTTGTCAGTGTCTATGACCAACTTATGGATGGATACCCCAGTGATGGTGACCGCGAAGCAATCTTCAGAGCGTACATATATGCATTGAAAGAGGATCCTGAACAGTACAGGAGTGATGCCAAAAAGCTGGAAGAATGGGCTGGCTCACAGGATGCAAAGTCTATTGTTGAATTTCAATCTAGAGATGGAGAGGTTGAGGGAATATTGAAAGACATTTCTGAACGAGCGAGGGAAAAGAAAATTTAG

Fln Alignment:

Contig5831___SALIKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDREAIFRAYIYALKEDPEQYRSDAKKLEEWAGSQDAKSIVEFQSRDGEVEGILKDISERAREKKI
A9NPI7_________________SAFLKAYKRPIPSIYNNVIQELIVQQHLMRYKRTYQYDAVFALGFVSVYDQLMDGYPSDGDSEAIFRAYINALKEDPEQYRSDAKKLEEWASSQDAKSIVEFQSRDGEVEGILKDIAERAREKKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain