SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5814

Length: 1428 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5814

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10747	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	vesicle-associated membrane protein-associated protein [Triticum aestivum]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	vesicle-associated membrane	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Ribosomal protein L19	IPR001857	-	-
Sma3		IPR003612	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Vesicle-associated membrane protein	IPR016763	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABZ6

Fln msg:

Fln protein: MTNKDLLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEDGKVVEECKLRVVYAPPPQPPSPVPEGSEEGLSPRASDSGKQNTGLFEAAPKELGELKAKLTEARTMLSKLTDERNTVVNQTQQLRQELESIRRGTQNAHSHFSILFCLIVGFLGILVGYLVSA*

Protein Length: 237

Fln nts: ATGGGACACTTCTACTGGAATTTCTAGGATTCTCACACCCTCACCGCATTTATTACATTTCTCGGCTCTTGTAAGCCCAACTCCACCCTCACAGTGCGAAGCCATCTCCCATCTGTGCAGCAGAAGCATAGTGGTCTGTAATCGCCTCAAGAAAATCCTCACGCTCCAATTACAGTGCAGGGGCTTTGGAACTCTCTGAATTCGCGCGCTGTTGCAAAACCAGGAGCTGCATTGCTAGGGCTGTAAAATTGATCTGAATATGAGTTGGCAAACATCTTCAGATTTCGCGTTTTGAGCGTTGGAGGAGCGGGTTTCTGGGAGCTTCAAGGTCCGGAAGATCCCAGGTCTTTTCTGGTTACCTCAATCGCCGCTTGGAAGTGTTGATCTGTTCGTGAAATGGGGCTTTGCAAAAGCTGATCTAAAGAGGTTGTTTTGAGGGTTGCGTTTGGCCTGGGAATTTGTACCGGGGTTCACGTTCAAGTTCAGGGTAAAGA_-_ATGACTAACAAGGATCTTCTGACGATTCATCCGACTGAACTTAAATTCCCGTTCGAACTGAAGAAGCAGAGTTCATGTTCTCTTCAGTTGGTAAATAACTCAGATCATTATGTGGCCTTCAAGGTGAAAACTACATCCCCAAAGAAGTATTGTGTACGACCCAACACTGGAGTTGTCCTGCCTAAGTCTACCTGTGATGTTATAGTCACCATGCAATCACAGCGAGAAGCCCCTCCTGATCTGCAGTGCAAAGACAAATTTCTTGTGCAGAGCGTTGTAGCACCTTATGGGGTAGATCAGAAGGATATCACTCAGGAAATGTTCAATAAGGAGGATGGGAAGGTTGTTGAGGAGTGCAAGCTCAGGGTGGTTTATGCTCCTCCACCCCAACCTCCTTCTCCAGTTCCTGAAGGATCAGAAGAGGGCCTATCTCCAAGGGCATCTGACAGTGGAAAACAGAATACTGGCTTGTTTGAAGCGGCGCCCAAAGAACTTGGTGAATTGAAGGCAAAACTTACTGAGGCACGGACAATGCTGTCAAAATTAACAGATGAAAGGAACACAGTTGTGAACCAAACTCAACAACTACGTCAGGAATTGGAATCAATTCGCCGAGGAACTCAAAACGCACATTCTCACTTTTCCATCCTGTTTTGTTTGATTGTTGGTTTTCTAGGTATTCTAGTTGGTTACCTTGTTAGTGCATAG___ATTTGATGTAACCATTTCCGTCACTGTTAGAAAGATAAAGTGTTTGGGGTGCAAAGGTTTTGTTCGAAAGTTTTTCTAAAAGCATGAAGCATATTTGGTGACCTTTGCGTTAGGTATTTGCTGCTTGAATACGTAATTTTTGTTATGAATGCTATTGTTGAGCTCCAGCATATTAAGAGAGAAGCTCAGACATTGTCAAAGTGAAGTTGCAATACGGTTGGGTAGT

Fln Alignment:

Contig5814___MTNKDLLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEDGKVVEECKLRVVYAXXXXXXXXXXXXXXXXXXXRA--SDSGKQNTGLFEAAPKELGELKAKLTEARTMLSKLTDERNTVVNQTQQLRQELESIRRGTQNAHSHFSILFCLIVGFLGILVGYLVS
D5ABZ6_________________MSNRELLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEEGKVIEECKLRVVYAPPPQPPSPVPEGSEEGLSPRALPSDSGKQNTGLFEVAPKELGELKAKLTEARTMLSKLTDERNTVVQQTQQLRQELESMRQGAQNTQSRFSILFCLIVGFLGILVGYLVN

SNPs (tot: 3)

Position	A %	C %	T %	Probability
142	75		25	0.996473
147	25	75		0.996473
270		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain