SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5724

Length: 2149 nt

UniGene Fasta

>biog2_v2.0_unigene5724
ATGGGAACATTGATCGATTTTTCAGTTCATTATTTTCAGCTTCTAGAAGCAGGAATGTCTCTTATTTCTGCTGTGCCGTTGGCCTCCTCGTGCTTGTCCAAATCTTTGATCAGTTCTGTTCGTGAGCATAAGGCTCTCGGTAGAGCAATCGCAACACTGCAAATGTCTAGGCCAGGAAAATCTGTGGCGGCTTCCACCAGGATGAGTTCGGCCACTGCCGGATCTGATGATGGCGTAAAAAGGCGCATAGGCGATTATCATTCTAACCTGTGGGACGACAATTTCATACAATCTCTCTCATCACCTTATGGGGCATCTTCGTACGGTGAGCATGCTGACAGACTTATTGGGGAAGTGAAGGAGATTTTCAACTCATTTTCGATTGCAGATGGAGAATTAACCAGTCCTGTCAATGATCTTCTTCAACAGCTTTGGATGGTCGATAATGTTGAACGTTTGGGGATCGACAGACATTTCCAAACTGAAATAAAAGTTGCTCTTGACTATGTTTACAGATATTGGAGCGAGAAAGGCATTGGATGTGGGAGGGATAGTGCTTTTACCGATCTCAACACAACTGCCCTGGGGTTTCGAATTTTTCGACTGCATGGATATTCTGTGTCTTCGGATGCATTTGAACACTTTAAAGACCAAAAGGAAGAGTTTACCGCTTCCGCCAATGATACAGAGTTGCAGACAAGAAGCGTTTTTAATTTATTTCGAGCTTCTCTGATTGCTTTTCCCGAGGAAAAAGTTCTGGAAGAGGCTGAAAAATTCGCTGCTGCATATTTAAAAGCAGCCCTACAAACCCTTCCTGTCTCGGGCCTTTCACGAGAAATACAATACGTTTTCGATTATCGTTGGCACTCAAATTTGCCTAGACTGGAAGCTAGGAGTTACATCGACATCCTTTCAGATAATACGATCAGTGGAACGCCAGATGCGAACACTAAAAAATTCTTAGAACTGGCGAAATTGGAGTTCAATATTTTCCATTCTCTACAACAGAAAGAGTTACAATGTCTGTGGAGATGGTGGAAAGAATGGGGTTGCCCAGAACTAACCTTCGTTCGACATCGTTACGTGGAATTCTACACTTTGGTCTCTGGCATTGACATGGTGCCTGAACATGCTACATTCAGACTGAGCTTTGTTAAAACGTGCCATCTTATCACGATTCTGGACGACATGTACGACACCTTCGGAACAATTGACGAGCTCCGACTCTTCACAGCCGCGGTTAAGAGATGGGATCCGTCGGCGACGGAGTGCCTTCCTGAATATATGAAAGGAGTGTACATGGTGCTTTACGAAACCGTAAATGAAATGGCGAAAGAAGCACAGAAATCACAAGGCCGAGACACGCTCGGCTATGTTCGACAGGCTTTGGAGGATTATATCGGTGGTTATCTTAAAGAAGCAGAGTGGATCGCAACGGGTTATGTGCCAACGTTTCAGGAGTACTTCGAGAACGGGAAACTCAGTTCTGGTCATCGCATAGCGACACTGCAACCCATACTCACATTGAGTATTCCCTTTGCTCATCATATCCTGCAGGAAATTGACTTTCCGTCCAAATTCAATGATTATGCGTGTTCCATCCTTCGATTACGAGGTGACACGCGGTGTTACCAGGCGGACAGTGCTCGTGGAGAAGAAGCTTCGTGTATATCGTGCTATATGAAAGAAAATCCCGGGTCAACACAGGAAGATGCTCTGAATCATATCAACGGTATGATCGAAGACATGATCAAAAAATTAAATTGGGAGTTTCTTAGACCGGACAACAATGCTCCAATATCTTCCAAGAAGCATGCTTTTAACATTAGCAGAGGTTTACATCACTTCTACAACTACCGAGATGGCTACAGTGTTGCCAGCAACGAAACTAAGGATCTGGTGATCAAAACCGTTCTTGAACCTGTGCTTATGTAACCACATATCAACATACCAGATTTACATTAAGTTATACCTAGTCTACGTTACTTTAGGTTATGTGTTTTATTATTGTACTTTTCGGACTCTTTGGTCGTATAGGCCTAGGCCTAGGCCTAGGCTGCAAAGGTGTTTCAGGACCTTGCAATGGTGAAAATTGATAAAGATGGCAATGTTGTATTAAAGGAAATAAAACCCGCCGGTCAGTTTTACG

Ace file of the UniGene biog2_v2.0_unigene5724

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27424	146/148
SustainPine v2.0	sp_v2.0_unigene65880	2/148

Source	Descriptions	Term	Type	Identity
AutoFact	(+)-3-carene synthase n=5 Tax=Picea RepID=F1CKI8_PICSI	-	-	76%
FL-Next	tr=(+)-3-carene synthase; Picea abies (Norway spruce) (Picea excelsa).	-	-	80%
Blast2go	3-carene synthase	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q84SM8

Fln msg:

Fln protein: MGTLIDFSVHYFQLLEAGMSLISAVPLASSCLSKSLISSVREHKALGRAIATLQMSRPGKSVAASTRMSSATAGSDDGVKRRIGDYHSNLWDDNFIQSLSSPYGASSYGEHADRLIGEVKEIFNSFSIADGELTSPVNDLLQQLWMVDNVERLGIDRHFQTEIKVALDYVYRYWSEKGIGCGRDSAFTDLNTTALGFRIFRLHGYSVSSDAFEHFKDQKEEFTASANDTELQTRSVFNLFRASLIAFPEEKVLEEAEKFAAAYLKAALQTLPVSGLSREIQYVFDYRWHSNLPRLEARSYIDILSDNTISGTPDANTKKFLELAKLEFNIFHSLQQKELQCLWRWWKEWGCPELTFVRHRYVEFYTLVSGIDMVPEHATFRLSFVKTCHLITILDDMYDTFGTIDELRLFTAAVKRWDPSATECLPEYMKGVYMVLYETVNEMAKEAQKSQGRDTLGYVRQALEDYIGGYLKEAEWIATGYVPTFQEYFENGKLSSGHRIATLQPILTLSIPFAHHILQEIDFPSKFNDYACSILRLRGDTRCYQADSARGEEASCISCYMKENPGSTQEDALNHINGMIEDMIKKLNWEFLRPDNNAPISSKKHAFNISRGLHHFYNYRDGYSVASNETKDLVIKTVLEPVLM*

Protein Length: 646

Fln nts: _-_ATGGGAACATTGATCGATTTTTCAGTTCATTATTTTCAGCTTCTAGAAGCAGGAATGTCTCTTATTTCTGCTGTGCCGTTGGCCTCCTCGTGCTTGTCCAAATCTTTGATCAGTTCTGTTCGTGAGCATAAGGCTCTCGGTAGAGCAATCGCAACACTGCAAATGTCTAGGCCAGGAAAATCTGTGGCGGCTTCCACCAGGATGAGTTCGGCCACTGCCGGATCTGATGATGGCGTAAAAAGGCGCATAGGCGATTATCATTCTAACCTGTGGGACGACAATTTCATACAATCTCTCTCATCACCTTATGGGGCATCTTCGTACGGTGAGCATGCTGACAGACTTATTGGGGAAGTGAAGGAGATTTTCAACTCATTTTCGATTGCAGATGGAGAATTAACCAGTCCTGTCAATGATCTTCTTCAACAGCTTTGGATGGTCGATAATGTTGAACGTTTGGGGATCGACAGACATTTCCAAACTGAAATAAAAGTTGCTCTTGACTATGTTTACAGATATTGGAGCGAGAAAGGCATTGGATGTGGGAGGGATAGTGCTTTTACCGATCTCAACACAACTGCCCTGGGGTTTCGAATTTTTCGACTGCATGGATATTCTGTGTCTTCGGATGCATTTGAACACTTTAAAGACCAAAAGGAAGAGTTTACCGCTTCCGCCAATGATACAGAGTTGCAGACAAGAAGCGTTTTTAATTTATTTCGAGCTTCTCTGATTGCTTTTCCCGAGGAAAAAGTTCTGGAAGAGGCTGAAAAATTCGCTGCTGCATATTTAAAAGCAGCCCTACAAACCCTTCCTGTCTCGGGCCTTTCACGAGAAATACAATACGTTTTCGATTATCGTTGGCACTCAAATTTGCCTAGACTGGAAGCTAGGAGTTACATCGACATCCTTTCAGATAATACGATCAGTGGAACGCCAGATGCGAACACTAAAAAATTCTTAGAACTGGCGAAATTGGAGTTCAATATTTTCCATTCTCTACAACAGAAAGAGTTACAATGTCTGTGGAGATGGTGGAAAGAATGGGGTTGCCCAGAACTAACCTTCGTTCGACATCGTTACGTGGAATTCTACACTTTGGTCTCTGGCATTGACATGGTGCCTGAACATGCTACATTCAGACTGAGCTTTGTTAAAACGTGCCATCTTATCACGATTCTGGACGACATGTACGACACCTTCGGAACAATTGACGAGCTCCGACTCTTCACAGCCGCGGTTAAGAGATGGGATCCGTCGGCGACGGAGTGCCTTCCTGAATATATGAAAGGAGTGTACATGGTGCTTTACGAAACCGTAAATGAAATGGCGAAAGAAGCACAGAAATCACAAGGCCGAGACACGCTCGGCTATGTTCGACAGGCTTTGGAGGATTATATCGGTGGTTATCTTAAAGAAGCAGAGTGGATCGCAACGGGTTATGTGCCAACGTTTCAGGAGTACTTCGAGAACGGGAAACTCAGTTCTGGTCATCGCATAGCGACACTGCAACCCATACTCACATTGAGTATTCCCTTTGCTCATCATATCCTGCAGGAAATTGACTTTCCGTCCAAATTCAATGATTATGCGTGTTCCATCCTTCGATTACGAGGTGACACGCGGTGTTACCAGGCGGACAGTGCTCGTGGAGAAGAAGCTTCGTGTATATCGTGCTATATGAAAGAAAATCCCGGGTCAACACAGGAAGATGCTCTGAATCATATCAACGGTATGATCGAAGACATGATCAAAAAATTAAATTGGGAGTTTCTTAGACCGGACAACAATGCTCCAATATCTTCCAAGAAGCATGCTTTTAACATTAGCAGAGGTTTACATCACTTCTACAACTACCGAGATGGCTACAGTGTTGCCAGCAACGAAACTAAGGATCTGGTGATCAAAACCGTTCTTGAACCTGTGCTTATGTAA___CCACATATCAACATACCAGATTTACATTAAGTTATACCTAGTCTACGTTACTTTAGGTTATGTGTTTTATTATTGTACTTTTCGGACTCTTTGGTCGTATAGGCCTAGGCCTAGGCCTAGGCTGCAAAGGTGTTTCAGGACCTTGCAATGGTGAAAATTGATAAAGATGGCAATGTTGTATTAAAGGAAATAAAACCCGCCGGTCAGTTTTACG

Fln Alignment:

Contig5724___EHKALGRAIATLQMSRPGKSVAASTRMSSATAGSDDGVKRRIGDYHSNLWDDNFIQSLSSPYGASSYGEHADRLIGEVKEIFNSFSIADGELTSPVNDLLQQLWMVDNVERLGIDRHFQTEIKVALDYVYRYWSEKGIGCGRDSAFTDLNTTALGFRIFRLHGYSVSSDAFEHFKDQKEEFTASANDTELQTRSVFNLFRASLIAFPEEKVXXXXXXXXXXXXXXXXQTLPVSGLSREIQYVFDYRWHSNLPRLEARSYIDILSDNTISGTPDANTKKFLELAKLEFNIFHSLQQKELQCLWRWWKEWGCPELTFVRHRYVEFYTLVSGIDMVPEHATFRLSFVKTCHLITILDDMYDTFGTIDELRLFTAAVKRWDPSATECLPEYMKGVYMVLYETVNEMAKEAQKSQGRDTLGYVRQALEDYIGGYLKEAEWIATGYVPTFQEYFENGKLSSGHRIATLQPILTLSIPFAHHILQEIDFPSKFNDYACSILRLRGDTRCYQADSARGEEASCISCYMKENPGSTQEDALNHINGMIEDMIKKLNWEFLRPDNNAPISSKKHAFNISRGLHHFYNYRDGYSVASNETKDLVIKTVLEPVLM
Q84SM8_________________ELKALCRPIATLGMCRRGKSVMASKSTSLTTAVSDDGVQRRIGDHHSNLWDDNFIQSLSSPYGASSYGERAERLIGEVKEIFNSLSRTDGELVSHVDDLLQHLSMVDNVERLGIDRHFQTEIKVSLDYVYSYWSEKGIGSGRDIVCTDLNTTALGFRILRLHGYTVFPDVFEHFKDQMGRIACSDNHTERQISSILNLFRASLIAFPGEKVMEEAEIFSATYLKEALQTIPVSSLSQEIQYVLQYRWHSNLPRLEARTYIDILQENTKNQMLDVNTKKVLELAKLEFNIFHSLQQNELKSVSRWWKESGFPDLNFIRHRHVEFYTLVSGIDMEPKHCTFRLSFVKMCHLITVLDDMYDTFGTIDELRLFTAAVKRWDPSTTECLPEYMKGVYTVLYETVNEMAQEAQKSQGRDTLSYVRQALEAYIGAYHKEAEWISSGYLPTFDEYFENGKVSSGHRIATLQPTFMLDIPFPHHVLQEIDFPSKFNDFACSILRLRGDTRCYQADRARGEEASCISCYMKDNPGSTQEDALNHINNMIEETIKKLNWELLKPDNNVPISSKKHAFDINRGLHHFYNYRDGYTVASNETKNLVIKTVLEPVPM

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
131	85		14		0.993533
288	80		20		0.995493
294		20		80	0.995493
1541		80	20		0.999996
1701		75		25	0.996473
2053	33	50			1.0
2054	33			50	1.0
2062		75		25	0.996473
2063	75			25	0.996473
2064	75	25			0.996473
2068	25			75	0.996473
2069		25	75		0.996473
2070		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
2035	2057	TAGGCC TAGGCC TAGGCC TAGGC	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain