SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5685

Length: 489 nt

UniGene Fasta

>biog2_v2.0_unigene5685
TCTCAGCATTTGAAGATGGTGGACTGGATAATGAGAAGGCTGTCAAGGAGACAGGAAAAAGATTTAGGGATACTGTTCTTGCTCTGGGTGGTGGCCGGCCCCCATTGAAGGTTTTCATAGATTTCCGGGGTAGAGAGCCATCTACGGATCCACTCCTCAGGCATAATGGCTTGCTGCCAACAGCTGCAGCAGCTTAAAGAAGAATCTGTGAATGAAAAATGCAATTAGAATGGTATCCTTTCTGTATATGCAGCATTTCCATTTACGACTGTCATTTGCACGTCCTTGTTACATTTGTTATGTAGTTCGTCTTACAAAATGCTGCAGTGGTGTCTTGGAGAAACAAAGTACATGTTCTTTTGCGAATAAGTTGGCTGTCTTTTTATATAAAGAAAATGATAAAAATTCACTGACAATTAAATATAAGCTGTAAAACAGGATTGAGGATAAAGCATGAAACTAGACATGTAAGAGCTACAATGTAGATTG

Ace file of the UniGene biog2_v2.0_unigene5685

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6753	5/9
SustainPine v2.0	sp_v2.0_unigene18262	3/9
SustainPine v2.0	sp_v2.0_unigene32790	1/9

Source	Descriptions	Term	Type	Identity
AutoFact	Oligopeptidase A, putative n=1 Tax=Ricinus communis RepID=B9SMK4_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	oligopeptidase a	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	proteolysis	GO:0006508	Biological Process	86%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%
Blast2go	apoplast	GO:0048046	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase M3A/M3B	IPR001567	-	-
Sma3		IPR017442	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADL7

Fln msg: your sequence is shorter than subject: 65 - 413

Fln protein: SAFEDGGLDNEKAVKETGKRFRDTVLALGGGRPPLKVFIDFRGREPSTDPLLRHNGLLPTAAAA*

Protein Length: 66

Fln nts: TCTCAGCATTTGAAGATGGTGGACTGGATAATGAGAAGGCTGTCAAGGAGACAGGAAAAAGATTTAGGGATACTGTTCTTGCTCTGGGTGGTGGCCGGCCCCCATTGAAGGTTTTCATAGATTTCCGGGGTAGAGAGCCATCTACGGATCCACTCCTCAGGCATAATGGCTTGCTGCCAACAGCTGCAGCAGCTTAA___AGAAGAATCTGTGAATGAAAAATGCAATTAGAATGGTATCCTTTCTGTATATGCAGCATTTCCATTTACGACTGTCATTTGCACGTCCTTGTTACATTTGTTATGTAGTTCGTCTTACAAAATGCTGCAGTGGTGTCTTGGAGAAACAAAGTACATGTTCTTTTGCGAATAAGTTGGCTGTCTTTTTATATAAAGAAAATGATAAAAATTCACTGACAATTAAATATAAGCTGTAAAACAGGATTGAGGATAAAGCATGAAACTAGACATGTAAGAGCTACAATGTAGATTG

Fln Alignment:

Contig5685___SAFEDGGLDNEKAVKETGKRFRDTVLALGGGRPPLKVFIDFRGREPSTDPLLRHNGLLPTAAAA
D5ADL7_________________SAFEDAGLENEKAVKETGKRFRDTILALGGGRPPLQVFMDFRGREPSTDPLLRHNGLLPTTAAS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
165		20		80	0.995493
187	14		85		0.993533
188		85		14	0.993533
189	85		14		0.993533
191		85	14		0.993533
196		14		85	0.993533
201	85			14	0.993533
202	42		57		1.0
236	83			16	0.994512
240		16		83	0.994512
259			16	83	0.994512
298	22		77		0.999999
300			11	88	0.923564
301	77	11	11		0.968132
302			11	88	0.923564
315	88	11			0.923564
316	11	88			0.923564
320	88			11	0.923564
327	88			11	0.923564
332		11		88	0.923564
333	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain