SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5655

Length: 1400 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5655

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16374	23/25
SustainPine v2.0	sp_v2.0_unigene60894	2/25

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=1 Tax=Pinus pinaster RepID=F4MKL8_PINPS	-	-	90%
FL-Next	sp=Malate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	99%
Blast2go	mitochondrial malate dehydrogenase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	0.0	88%
Blast2go	oxidoreductase activity, acting on CH-OH group of donors	GO:0016614	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL8

Fln msg:

Fln protein: MGDSAFKLWNLPLLHLPSACTLSVLPAAKMSSAMRRLVGSALKNASSSSFKTNVMPRRFYSSCGSPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAGVPVEEVDVPVVGGHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKVRLGEKGVEEVLGLGFLSEYEKQGLEGLKSELKSSIEKGIKFASEN*

Protein Length: 385

Fln nts: T_-_ATGGGGGATTCGGCCTTTAAGCTCTGGAATCTCCCCCTTCTTCATCTGCCTTCAGCTTGCACTCTTTCAGTGTTACCAGCGGCAAAAATGAGTTCTGCAATGCGACGATTGGTGGGATCTGCACTGAAGAATGCATCATCTTCTTCTTTCAAAACTAATGTTATGCCGAGAAGGTTTTATTCCAGTTGTGGAAGTCCTCCGCCACGCAAGGTTGTTGTGTTGGGAGCTGCTGGGGGTATTGGGCAGCCATTGGCTCTTCTGATGAAACTCAATCCTCTGGTGTCAAAGTTGGCGCTCTATGATATCGCTGGCACTCCAGGTGTGGCTGCCGATGTCGGCCACATCAACAGCCGTGCTGAGGTTGCAGGATATATGGGAGAGGAACAACTTGGCACGGCATTGGAGAATGCAGATGTTGTGATCATTCCTGCTGGTGTGCCTCGAAAACCTGGCATGACCCGTGATGATCTCTTCAACATCAATGCAGGGATTGTTAAATCTCTTTGCTCTGCAATTGCAAAATACTGCCCAGAGGCAATTGTAAATATGATCAGCAATCCTGTAAATTCTACTGTACCAATAGCTGCTGAGGTTTTTAAGAAGGCAGGGACCTATAATGAAAAGAAACTCTTTGGTGTTACTACTCTTGATGTTGTCCGCGCAAAGACGTTCTATGCTTCAAAAGCAGGAGTTCCTGTTGAAGAAGTTGATGTTCCTGTTGTAGGTGGACATGCGGGTGTTACAATTCTTCCACTTTTTTCACAGGCAACACCAAAGCCAAACTCTGTATTGTCTGAGGAGGACATTAAAGCCTTGACAAAGCGCACACAGGATGGAGGAACTGAAGTTGTTGAAGCAAAAGCAGGGAAAGGTTCAGCCACACTGTCTATGGCTTATGCTGGAGCTGTTTTTGCTAGCTCTGTTCTAAAAGGTCTGAATGGGGAACCAAACATTGTGGAGTGCTCTTATGTCCAATCTAATGTTACTGAATTGCCTTTCTTTGCCTCTAAGGTAAGACTGGGTGAAAAAGGTGTTGAAGAAGTATTGGGTTTGGGTTTCCTTTCCGAGTATGAGAAACAGGGGCTAGAAGGACTGAAATCAGAGCTGAAGTCTTCCATTGAGAAGGGCATTAAGTTCGCGAGTGAGAACTGA___GGTTGCCCTTTTTTGGTACTAATCAAGTTTTGTTTGTTACGTTGAGAGTAGCTGGGATGTGTCCAGCAATTTTTATCTTCTCATTTATTTAAGCACCCTGGGTCATTTGAAGAGGATGCAAAAGTCCTCTAACCTTGTCCTTTGCTGACATTTTAGATTTATTTACAGCAATAAAGGCCTCACTGAAGCCTTGCCATCTCTGCTCATTTTTTCATGGTGGTACCTGAACAATGGTACTCGAGAGAGC

Fln Alignment:

Contig5655___MSSAMRRLVGSALKNASSSSFKTNVMPRRFYSSCGSPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAXXXXXXXXXXXXXXHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKXXXXXXXXXXXXXXXXXXXYEKQGLEGLKSELKSSIEKGIKFASEN
F4MKL8_________________MSSAMRRLVGSALKNASSSSFKTNVMPRRFYSSGGSPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENANVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAGVPVEEVDVPVVGGHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKVRLGEKGVEEVLGLGFLSEYEKQGLEGLKSELKSSIEKGIKSASEN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
387	88		11		0.923564
400	12		87		0.992554
416	25		75		1.0
476		55		44	1.0
911	14		85		0.993533
1004		14		85	0.993533
1131	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain