SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5647

Length: 807 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5647 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene69	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	acetolactate synthase, small subunit, putative [Oryza sativa Japonica Group] gb\|ABA92419.1\| acetolactate synthase small subunit, putative, expressed [Oryza sativa Japonica Group]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	acetolactate synthase small subunit	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetolactate synthase.	EC:2.2.1.6	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	81%
Blast2go	Butanoate metabolism	00650	81%
Blast2go	C5-Branched dibasic acid metabolism	00660	81%
Blast2go	Pantothenate and CoA biosynthesis	00770	81%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	branched chain family amino acid biosynthetic process	GO:0009082	Biological Process	81%
Blast2go	amino acid binding	GO:0016597	Molecular Function	81%
Blast2go	acetolactate synthase activity	GO:0003984	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Acetolactate synthase, small subunit	IPR004789	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
371	83		16		0.994512
592	66		33		0.997452
598	66	33			0.997452
599	66	33			0.997452
602	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain