SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5415

Length: 967 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5415

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18147	32/44
SustainPine v2.0	sp_v2.0_unigene26886	12/44

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L13a n=3 Tax=Picea RepID=RL13A_PICMA	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ribosomal protein l13a	-	-	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L13	IPR005822	-	0.0	-
Sma3	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
329		87		12	0.992554
360	11			88	0.923564
364	88		11		0.923564
474	28		71		1.0
600	21		78		1.0
604			21	78	1.0
613	22	77			1.0
615		22	77		1.0
621	36		63		1.0
639	78		21		1.0
642	26		73		1.0
663	73		26		1.0
666			27	72	1.0
670	72			27	1.0
675		27		72	1.0
696	40		60		1.0
727	53	46			1.0
728			53	46	1.0
742		46		53	1.0
744	53		46		1.0
769	90			10	0.90298
778	22			77	0.999999
790		20		80	0.995493
791			20	40	1.0
795		75	25		0.996473
806	66			33	0.997452
807	66		33		0.997452
829		33		66	0.997452
833		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain