SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5404

Length: 1111 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5404 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16164	43/43

Source	Descriptions	Term	Type	Identity
AutoFact	14-3-3 domain containing protein	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	14-3-3-like protein	-	-	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	14-3-3 protein	IPR000308	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUG8

Fln msg:

Fln protein: MTEKERENHVYMAKLAEQAERYDEMVDSMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEEAKGNELNVKRIKEYRHKVEDELSRICNDILTIIDEHLIPSSSTGESTVFYYKMKGDYYRYLAEFKTGNERKEAADQSLKAYQAASNTATTDLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLQEEGGEDQPKGEEDKIEEIEH*

Protein Length: 260

Fln nts: ATGGGGCCTCGGAGGGTTTCTTTGCGCGAAGATCACAGGTCAGAATAGCCATTTGGTGAAGGAAATCTGTGGTTTTTTGGTTCAGAGCACTGATATCAGTGTTAGTCGTTCTGTTCACGTCATTTTGAGCTCAAATTTGAGGTCTTTCTGTGCGGATTCGGTCAAAA_-_ATGACGGAGAAGGAAAGAGAAAATCATGTTTACATGGCCAAGCTTGCCGAGCAAGCCGAGCGATACGATGAGATGGTGGATTCAATGAAGAAAGTTGCTAAGTTGGATGTGGAGCTTACTGTGGAAGAGAGAAACTTACTCTCAGTTGGCTACAAGAATGTCATTGGGGCAAGAAGAGCTTCATGGCGGATAATGTCTTCCATTGAGCAGAAAGAAGAGGCAAAGGGTAACGAGCTCAATGTCAAACGGATCAAGGAGTACCGTCACAAAGTTGAAGATGAACTCAGTAGGATTTGCAACGACATTCTTACAATAATTGATGAACATCTCATTCCCTCTTCTAGCACTGGCGAGTCTACAGTTTTCTACTACAAGATGAAGGGGGATTATTATCGGTATCTTGCAGAATTTAAGACAGGAAATGAAAGGAAAGAAGCTGCAGACCAATCTCTCAAAGCTTATCAGGCTGCTTCAAACACAGCGACTACAGATTTGGCACCTACCCACCCAATCAGGCTTGGGCTGGCATTGAACTTTTCAGTTTTCTACTATGAAATTTTGAACTCGCCTGAGAGGGCTTGCCACTTGGCCAAACAAGCTTTTGATGAAGCAATTGCGGAGCTTGACACTCTCAGTGAAGAGTCATACAAGGATAGCACATTAATCATGCAACTACTGAGAGACAATCTTACTCTCTGGACTTCAGATTTACAAGAAGAAGGAGGGGAAGATCAACCCAAAGGTGAAGAGGATAAGATAGAAGAAATTGAGCACTAG___TTTCAGAAGGGCAGTGTAATGGCTACTTTCAGCATAACAACTGCCATGGCAGTTGTATGCTGGAAGGCAGTTTATATTTGCTATGTTTCTTCATTCCTCCATGCTGGTCCTGAGGCGCTCTGCATAGACTAAAGAATTGTATTCATGATCCCTGTTGCCTTGTTTTA

Fln Alignment:

Contig5404___MTEKERENHVYMAKLAEQAERYDEMVDSMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEEAKGNELNVKRIKEYRHKVEDELSRICNDILTIIDEHLIPSSSTGESTVFYYKMKGDYYRYLAEFKTGNERKEAADQSLKAYQAASNTATTDLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLQEEGGEDQPKGEEDKIEEIEH
A9NUG8_________________MTEKERENHVYMAKLAEQAERYDEMVDSMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEEAKGNELNVKRIKEYRHKVEDELSRICNDILTIIDEHLIPSSSTGESTVFYYKMKGDYYRYLAEFKTGNERKEAADQSLKAYQAASNTATTDLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLQEEGGEDQPKGEEDKIEEIEH

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
447		25		75	0.996473
648		11	88		0.923564
650	88	11			0.923564
652	88			11	0.923564
656		12		87	0.992554
657	87	12			0.992554
714	33		66		1.0
723		11		88	0.923564
823	88		11		0.923564
980	10		90		0.90298
1040		60		40	1.0
1064		80		20	0.995493
1089	33	66			1.0
1090	33	66			1.0
1092	66	33			0.997452
1094		33	66		0.997452
1095	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain