SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5366

Length: 1404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5366 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25662	55/55

Source	Descriptions	Term	Type	Identity
AutoFact	potassium channel beta subunit [Egeria densa]	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	potassium channel beta subunit	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	ion channel activity	GO:0005216	Molecular Function	0.0	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-
Sma3	Potassium channel, voltage-dependent, beta subunit, KCNAB-related	IPR005399	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK94

Fln msg:

Fln protein: MASKSSMQYKNLGRTGLKVSQLSYGAWVSFGNQLDVKEAKGLLQCARDYGVNFFDNAEVYANGRAEEIMGQAIKELGWKRSDLVVSTKLFWGGPGPNDKGLSRKHIVEGTKASLKRLDMDYVDVLFCHRPDTSTPIEETVRAMNYIIDNGWAFYWGTSEWNAQQITEAWEVAKRLDMVGPCCEQPEYNLFSRHKVEVEYAPLYSNYGVGLTTWSPLASGVLTGKYTKGTIPPDSRFALENYKNLASRSLVDDVLKKVDGLKPIAAELDVPLAQLAIAWCASNPNVSTVITGATKESQIHENMKALDVIPKLTPDILERIESVVQSKPNDQNHIGRLIL*

Protein Length: 340

Fln nts: ATGGGGGAATCTATTTAATTCATGGCGATGGGGACGGGGTATTCCATTCGATGGGACCGCGAAGGATCATCCTTTGAAGTTTGTTCAGGCCAAGAAACTATATATACGGAAGGAAGGGGAGCAGAGCAGAGCAAAGTAATAGAGTCCTTGCAGATCAAGAGAGCAAAACGTCGATCTGCAACGGAGTAAGAAAAA_-_ATGGCGAGTAAGAGTTCGATGCAGTACAAGAACCTGGGGCGAACTGGACTGAAGGTGAGCCAGCTCTCATACGGAGCCTGGGTCAGCTTTGGCAACCAACTCGATGTCAAGGAAGCCAAAGGCTTGCTGCAATGCGCCAGGGACTATGGGGTCAATTTCTTCGACAATGCTGAGGTCTATGCCAATGGTCGAGCCGAAGAAATAATGGGGCAGGCCATAAAGGAATTGGGTTGGAAGAGATCCGACCTGGTGGTGTCGACCAAGCTCTTTTGGGGAGGCCCTGGCCCTAATGACAAGGGGCTTTCCCGCAAGCACATTGTCGAAGGCACCAAGGCTTCGCTGAAAAGGCTCGACATGGATTATGTCGATGTCCTGTTCTGCCACAGGCCCGATACCTCGACCCCCATAGAGGAGACTGTGAGGGCCATGAATTATATTATTGATAATGGGTGGGCGTTCTATTGGGGCACCAGTGAGTGGAACGCGCAACAGATCACCGAGGCCTGGGAGGTCGCTAAGAGACTCGACATGGTCGGACCTTGTTGCGAGCAGCCCGAGTACAATCTCTTTTCTCGTCACAAGGTCGAAGTTGAGTATGCACCCCTTTATAGTAACTATGGTGTGGGTTTGACTACATGGAGTCCACTTGCATCTGGAGTTTTGACTGGGAAATACACTAAGGGGACCATACCTCCAGATAGCCGTTTTGCATTAGAAAACTACAAGAACTTAGCAAGCAGGTCGTTGGTTGATGATGTTCTAAAGAAAGTGGATGGACTTAAACCCATTGCAGCAGAATTGGATGTGCCTCTAGCACAACTTGCTATTGCTTGGTGTGCATCAAATCCAAATGTTAGCACAGTCATTACTGGTGCAACAAAAGAAAGCCAGATTCACGAGAACATGAAAGCATTGGACGTTATTCCGAAATTGACACCAGATATCTTGGAGAGGATAGAATCTGTTGTCCAAAGCAAACCAAACGACCAGAATCATATAGGTAGATTAATACTTTGA___GTTGCCATACGGGTTGTCATGGCGCCCATAATTACAAAGATTAGCCAAAATATTTATTCAATAACATTTTGGTGCCATCTGGGGCTAGTTCAGTAAGAGTTTTGGTGAGTGTAGACAGTTCTGGCATCATATTTGAGTATATTGCAGAAAATACTTATAAACATTTTTTCTTAATACTATTTTATTAATTTT

Fln Alignment:

Contig5366___MASKSSMQYKNLGRTGLKVSQLSYGAWVSFGNQLDVKEAKGLLQCARDYGVNFFDNAEVYANGRAEEIMGQAIKELGWKRSDLVVSTKLFWGGPGPNDKGLSRKHIVEGTKASLKRLDMDYVDVLFCHRPDTSTPIEETVRAMNYIIDNGWAFYWGTSEWNAQQITEAWEVAKRLDMVGPCCEQPEYNLFSRHKVEVEYAPLYSNYGVGLTTWSPLASGVLTGKYTKGTIPPDSRFALENYKNLASRSLVDDVLKKVDGLKPIAAELDVPLAQLAIAWCASNPNVSTVITGATKESQIHENMKALDVIPKLTPDILERIESVVQSKP
A9NK94_________________MAIKSSMQYKNLGRTGLKVSQLSYGAWVSFGNQLDVKEAKGLLQCCRDYGVNFFDNAEVYANGRAEEIMGQAIKELGWKRSDLVVSTKLFWGGPGPNDKGLSRKHIVEGTKASLKRLDMDYVDVLFCHRPDTSTPIEETVRAMNYVIDEGWAFYWGTSEWNAQQITEAWEVAKRLDMVGPSCEQPEYNLFSRHKVEVEYAPLYNNYGVGLTTWSPLASGVLTGKYSKGNIPQDSRFALENYKNLASRSLVDDVLRKVDGLKPIAAELDVPLAQLAIAWCASNPNVSTVITGATKESQIHENMKALDVIPKLTPDVLERIESVIQSKP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1066	80	20			0.999996
1067	20	10			0.999998

SSRs (tot: 1)

Start position	End position	Sequence	Length
1272	1286	TGCTC TGCTC TGCTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain