SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5320

Length: 1439 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5320

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24968	72/73

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=1 Tax=Pinus pinaster RepID=F4MKL8_PINPS	-	-	79%
FL-Next	sp=Malate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	82%
Blast2go	mitochondrial nad-dependent malate dehydrogenase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	89%
Blast2go	metabolic process	GO:0008152	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	oxidoreductase activity, acting on CH-OH group of donors	GO:0016614	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL8

Fln msg:

Fln protein: MASAMRGALGSALRRANASQRRLYSTTGINSPPRKVAVLGAAGGIGQPLALLMKLNPLVSDLALYDIAGTPGVAADVGHVNTRAQVAGYMGDDQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCIAIAKYCPEALVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTMLDVVRAKTFYAAKAGVPVEEVNVPVVGGHAGVTILPLFSQATPKPNANLSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPNIVECTYVQSNITELPFFASKVRLGKSGIEEVLGLGPISAFEQQGLEALKSELKSSIEKGVKFATAN*

Protein Length: 350

Fln nts: CCCACCCGCACCTTCGCAAGGTGGGGACTCACTTTCATCTGTGCTGTGGTGGAGCAAGGACTTTAGAATTCCCCTAGGAGAGCTGAACAAGGAGGAGTGCTGTGGTGGAGCGAGGACTTTAGAATTCCGCTAGGAGATCTGAACAAGGAGGAGAAGAG_-_ATGGCTTCTGCAATGCGTGGAGCTCTCGGAAGCGCTCTGCGCAGGGCAAATGCGAGCCAAAGAAGGTTGTACTCAACAACAGGCATTAACTCCCCGCCTCGAAAGGTGGCTGTACTCGGTGCAGCGGGAGGAATTGGGCAGCCTCTTGCTCTGCTGATGAAACTTAACCCTCTTGTCTCTGATCTCGCTCTCTATGATATTGCTGGCACGCCTGGAGTTGCAGCTGATGTTGGTCACGTCAATACTCGAGCACAGGTTGCAGGATATATGGGCGATGATCAACTGGGTAAGGCATTGGAAGGATCAGATGTTGTGATAATTCCTGCTGGTGTGCCCCGTAAACCTGGGATGACACGTGACGATCTTTTCAATATTAATGCTGGCATTGTCAAATCCCTTTGTATAGCCATTGCAAAATATTGTCCTGAAGCATTAGTAAACATGATCAGCAATCCTGTAAATTCAACTGTACCCATTGCTGCTGAAGTTTTCAAGAAGGCTGGAACCTATAATGAAAAAAAACTCTTTGGTGTCACCATGCTTGATGTTGTTCGAGCAAAGACTTTCTATGCTGCCAAAGCAGGTGTCCCTGTGGAAGAAGTGAATGTCCCTGTTGTAGGAGGACATGCAGGTGTCACTATCCTTCCTCTCTTTTCACAGGCTACTCCAAAACCAAATGCTAATCTTTCGGATGAGGATATCAAAGCTCTGACTAAGCGTACTCAAGATGGAGGAACTGAAGTTGTTGAAGCGAAAGCTGGAAAAGGTTCTGCAACATTGTCTATGGCGTATGCTGGAGCAATATTTGCTGATGCATGTTTAAAGGGTTTGAATGGAGTGCCAAATATTGTGGAATGTACATATGTTCAGTCAAACATTACTGAATTGCCTTTCTTTGCCTCAAAGGTGAGACTGGGTAAAAGTGGCATTGAGGAGGTTCTGGGGTTGGGCCCCATCTCTGCTTTTGAACAACAGGGGTTGGAAGCATTGAAATCAGAACTCAAGTCTTCTATTGAGAAAGGAGTGAAGTTTGCTACTGCAAACTGA___GTCAGGACTCTCCTTGTGGTACTTCAGTGTTTGGTATTTACATTGAAGGAAGCTAAGATACTGCCATTCTGTCATATTGGTTTAGTAGGCACCCTATTGGGGCAGTTAGAGTTTAAATATGCTAGAGCCAGTTTGTGCAGTTTTTGTTGAACATTGCGCAGTATTCCATCCCAGGTCTGCCTTAGAGAAATGAAAATTTCTGTGGTCTTAATAAAGTTGGTAGGAAACACATCG

Fln Alignment:

Contig5320___MASAMRGALGSALRRANASQ-------RRLYSTTGINSPPRKVAVLGAAGGIGQPLALLMKLNPLVSDLALYDIAGTPGVAADVGHVNTRAQVAGYMGDDQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCIAIAKYCPEALVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTMLDVVRAKTFYAAKAXXXXXXXXXXXXXXHAGVTILPLFSQATPKPNANLSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPNIVECTYVQSNITELPFFASKVRLGKSGIEEVLGLGPISAFEQQGLEALKSELKSSIEKGVKFATAN
F4MKL8_________________MSSAMRRLVGSALKNASSSSFKTNVMPRRFYSSGG-SPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENANVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAGVPVEEVDVPVVGGHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKVRLGEKGVEEVLGLGFLSEYEKQGLEGLKSELKSSIEKGIKSASEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain