SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5307

Length: 1084 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5307

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15613	82/82

Source	Descriptions	Term	Type	Identity
AutoFact	Triosephosphate isomerase n=1 Tax=Picea sitchensis RepID=A9NRN6_PICSI	-	-	85%
FL-Next	sp=Triosephosphate isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cytosolic triosephosphate isomerase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triose-phosphate isomerase.	EC:5.3.1.1	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	89%
Blast2go	Fructose and mannose metabolism	00051	89%
Blast2go	Inositol phosphate metabolism	00562	89%
Blast2go	Carbon fixation in photosynthetic organisms	00710	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	89%
Blast2go	cellular carbohydrate metabolic process	GO:0044262	Biological Process	89%
Blast2go	response to zinc ion	GO:0010043	Biological Process	89%
Blast2go	small molecule metabolic process	GO:0044281	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	triose-phosphate isomerase activity	GO:0004807	Molecular Function	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	Triosephosphate isomerase	IPR000652	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRN6

Fln msg:

Fln protein: MGRKFFVGGNWKCNGTSEQVKKLVSTLNEAEVPSEDVVEVVVSPPFVFLSTVKALLRSDFAVAAQNCWVRKGGAFTGEISVEMLINLDIPWVILGHSERRLILKEDNEFVADKVAYALSQGLKVIACVGETLEQREAGDTLNVVSEQTKEIADKVVDWSNIVIAYEPVWAIGTGKVATPAQAQEVHYELRNWLKVNVSPEVAATTRIIYGGSVNAGNSVELAAQPDLDGFLVGGASLKAEFVDIIKSATVKQG*

Protein Length: 255

Fln nts: ATGGGGACGTCTCTGCCTAAATCTTTCGAGCAATTTTTTCTGTACCTTTTGGGTGAGGTTTCTTTCATCGATTCGCGAGAACACG_-_ATGGGTCGAAAGTTTTTCGTTGGAGGCAACTGGAAATGCAATGGTACTTCGGAGCAGGTTAAAAAGCTTGTTAGTACTCTCAATGAAGCAGAAGTGCCATCTGAAGATGTTGTGGAGGTTGTTGTGAGCCCTCCGTTTGTGTTTCTTTCAACAGTGAAGGCCTTGCTACGCTCTGATTTTGCAGTTGCTGCACAAAATTGTTGGGTAAGGAAAGGAGGTGCTTTCACTGGAGAGATCAGTGTAGAGATGCTGATCAATTTGGACATTCCATGGGTCATACTCGGTCATTCAGAGAGAAGGCTTATACTGAAAGAAGATAATGAGTTTGTTGCAGATAAAGTGGCTTATGCACTTTCTCAAGGTTTGAAGGTAATAGCTTGTGTTGGAGAGACTCTTGAACAACGGGAAGCTGGAGATACATTGAATGTAGTTTCTGAACAAACCAAAGAAATAGCAGATAAGGTGGTAGACTGGAGTAACATCGTTATAGCATATGAGCCTGTTTGGGCGATTGGAACTGGAAAAGTTGCAACCCCAGCTCAGGCTCAGGAGGTGCACTATGAATTAAGGAATTGGCTTAAGGTAAATGTTAGTCCTGAAGTAGCGGCAACAACCCGGATTATTTATGGCGGCTCTGTAAATGCTGGTAATTCTGTTGAATTGGCAGCACAACCTGATCTTGATGGATTTCTTGTTGGAGGAGCTTCCCTGAAGGCCGAATTTGTGGACATTATTAAGTCTGCAACTGTGAAGCAAGGCTAA___GTCAGAGAGAGTCATTCTGGCTTCTTTGCACGTGTTTGCTAGAAGAAACTTATAGTAGTAAAACATAGCATTTATGCATAAAGGTGGCCACTGCAAAATATCCCACATGATTTCATTCTATCATTCTACTTTGATAGCGTGAAAGGCAATGCCTAGGTTACATCTTCTTAAGACAGAAAATTACTTTTCGGAGTATAATATGCCATTAGAAATTAAATGGTTATCTCTATTCTCCAG

Fln Alignment:

Contig5307___MGRKFFVGGNWKCNGTSEQVKKLVSTLNEAXXXXXXXXXXXXXXXXXXXXXXKALLRSDFAVAAQNCWVRKGGAFTGEISVEMLINLDIPWVILGHSERRLILKEDNEFVADKVAYALSQGLKVIACVGETLEQREAGDTLNVVSEQTKEIADKVVDWSNIVIAYEPVWAIGTGKVATPAQAQEVHYELRNWLKVNVSPEVAATTRIIYGGSVNAGNSVELAAQPDLDGFLVGGASLKAEFVDIIKSATVKQG
A9NRN6_________________MGRKFFVGGNWKCNGTLEEVKKLVGTLNAAEVPSEDVVEVVVSPPFVFLSTVKALLRSDFAVAAQNCWVRKGGAFTGEISVEMLVNLGIPWVILGHSERRLLLNEDKEFVADKVAYALSQGLNVIACVGETLEQREAGDTLNVVSEQTKAIADKVVNWSNIVIAYEPVWAIGTGKVASPAQAQEVHYELRNWLNVNVSPEVAASTRIIYGGSVNAGNCVELAAQPDLDGFLVGGASLKAEFVDIIKSATVKQG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1016		59		40	1.0
1036		45	54		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain