SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5285

Length: 1285 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5285

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16582	86/86

Source	Descriptions	Term	Type	Identity
AutoFact	14-3-3 domain containing protein	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	14-3-3 protein	IPR000308	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRV7

Fln msg: your sequence is longer than subject: 295 - 260

Fln protein: MGESALLPLLSSSRGTQGGGSERPGQSVDLCSDNMSSDKERENHVYMAKLAEQAERYDEMVEAMKRVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEDAKGNDHNVKRIKEYRQKVEAELSKICHDIMTIIDEHLIPSSNIGESTVFYYKMKGDYYRYLAEFKTGNERKEAADQSLKAYQTASSTAESDLAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLQEDGVEDQTKGDEPVVGMDEEL*

Protein Length: 296

Fln nts: TTGCCAATTGTTT_-_ATGGGAGAGAGTGCTCTTCTTCCACTGCTCTCTAGCTCTCGTGGCACACAAGGAGGAGGTTCAGAGAGGCCAGGCCAGTCTGTGGATCTGTGTTCAGACAATATGAGTAGCGACAAGGAGCGGGAGAATCATGTTTACATGGCCAAACTCGCTGAGCAGGCCGAGCGATACGATGAAATGGTTGAAGCCATGAAGAGGGTCGCGAAGTTGGACGTGGAGTTAACTGTAGAAGAAAGGAATCTGCTCTCTGTTGGGTACAAAAATGTGATTGGGGCTCGGCGAGCTTCCTGGAGAATAATGTCTTCTATTGAGCAGAAGGAGGACGCGAAGGGCAATGATCATAACGTGAAACGCATCAAAGAGTATAGACAGAAAGTTGAAGCAGAGCTTTCTAAGATTTGTCATGATATTATGACCATAATTGATGAACACCTTATTCCTTCCTCCAATATTGGCGAATCTACTGTTTTCTACTATAAAATGAAAGGAGACTACTACCGTTATCTGGCTGAATTCAAAACAGGAAATGAGAGAAAAGAAGCCGCTGATCAGTCCTTGAAAGCTTACCAGACAGCTTCAAGTACTGCAGAGTCGGATTTAGCGCCAACTCATCCAATCAGACTTGGATTGGCCTTGAACTTCTCTGTTTTCTACTATGAAATAATGAATTCACCTGAAAGGGCTTGTCATCTGGCCAAGCAAGCTTTTGATGAAGCTATTGCAGAACTTGACACCTTGAGTGAAGAGTCATACAAAGATAGCACTTTAATCATGCAGCTCTTGAGGGATAATCTTACTTTGTGGACCTCTGATCTGCAGGAAGATGGAGTTGAGGATCAGACCAAGGGGGATGAGCCTGTAGTCGGGATGGATGAAGAGCTTTGA___GCAGGTACATGTAGAAACAAATGAAGTTGTTAGATCTATGGGCTTTTATGTCAGCCTCAATGTACTCTAGAGTACTCCTTTCTGCTCTGCAGTTGCAATTTACAAATTCGCTCTATTTATCTTGTTATTGACACCTGGTTTTGTTTATAAGTTTTAGATTGGAACAAAAGACCAGTAGGACATTATGGGGTCTTAACTTGGTGTGTATACCATGGCTATTAAATGCTTCAATATGTAATAGGGGCCCAGCACTGCAGTACTGTGTAGAATTTAGAGTCTTTCGTTGTGCATTATTATCGTTTTGAAGATTAATATAGGCCTTTGATGGATGAAGTGGCTTTGTTGCCACAAAGGAGCTGACTTCTTTGAGCTTTCCTCATTTTCTTT

Fln Alignment:

Contig5285___MSSDKERENHVYMAKLAEQAERYDEMVEAMKRVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEDAKGNDHNVKRIKEYRQKVEAELSKICHDIMTIIDEHLIPSSNIGESTVFYYKMKGDYYRYLAEFKTGNERKEAADQSLKAYQTASSTAESDLAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLQEDGVEDQTKGDEPVVGMDEEL
A9NRV7_________________MSSDKERENHVYMAKLAEQAERYDEMVEAMKRVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEEAKGNEHNVKRIREYRQKVEAELSKICHDIMTIIDEHLIPSSNIGESTVFYYKMKGDYFRYLAEFKTGNERKEAADQSLKAYQTASSTAESDLAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLQEDGVEDQVKGDDPAVGMDEEV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
704	25	75			0.996473
708		75	25		0.996473
835	87		12		0.992554
858	88			11	0.923564
895	10			90	0.90298
900		90	10		0.90298
1247		85	14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain