SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5250

Length: 1487 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene5250 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21983	121/123
SustainPine v2.0	sp_v2.0_unigene62554	2/123

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast chaperonin 21 n=1 Tax=Vitis vinifera RepID=Q6B4V4_VITVI	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	chaperonin 20	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	81%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	81%
Blast2go	copper ion binding	GO:0005507	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	apoplast	GO:0048046	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin 21, chloroplast	IPR017416	-	-
Sma3		IPR001476	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV77

Fln msg:

Fln protein: MATSQMGRGLTLKSYEGLRPAFPSKPSMASSSVSLRRFSCTTLSVRAATSVASKFSTLKPLGDRVLIKLKQAEEKTQGGILLPATSQKRPEGGEVVALGDAKTVGKTQIPLSVPLGANIVYSKWAGTEIEFNGVNHLLVKEDDIVGVLDTDDIKDLKPLNDRVLIKVAVAEEKTAGGLLLTESAKEKPSIGTIIAVGPGAYDEEGKRKPMSVTAGNTVLYSKFAGNEFKSGDGSEYVTLRVSDVLAVLS*

Protein Length: 251

Fln nts: ATGGGGGACTTATTAATTAGAGGAAACCGTCGTCAGCGTCTTTTCTCTGTTCACATTGATACAAGGACAAACATCTTTTAAAAGATTGCTCAAAGGGCATACCAGAACCATCTGGAAGCTTGTCTGATCTAATCTATATATGTATCTAAAACTTCATTTCATTTTGGTCTTCCAATCATTCAGTAGCTCCGTAAGGTTTTTCCATTTCTTTTAGTCAAGCTTTCCTGCGTTTCGAA_-_ATGGCGACCTCTCAGATGGGCAGGGGCCTTACTCTGAAGTCCTACGAGGGCCTGAGACCGGCTTTTCCCAGCAAGCCATCTATGGCGTCGTCCTCAGTGTCTCTCAGACGCTTTTCCTGCACCACGCTCTCTGTTAGGGCGGCAACTTCCGTGGCTTCCAAGTTTTCTACATTGAAGCCCCTGGGTGACCGAGTTTTGATTAAACTTAAGCAGGCGGAAGAGAAAACCCAAGGCGGTATCTTGCTACCCGCCACATCCCAGAAAAGACCCGAAGGGGGAGAGGTTGTGGCTCTTGGCGATGCCAAGACTGTTGGCAAGACACAGATTCCGCTTTCAGTTCCGCTTGGTGCAAATATTGTGTATTCCAAGTGGGCTGGCACAGAGATTGAATTCAATGGAGTTAATCATCTTCTTGTAAAGGAAGATGACATTGTGGGGGTTCTTGATACAGATGATATCAAGGACTTGAAGCCATTGAATGATCGAGTTTTGATTAAGGTTGCAGTGGCAGAAGAGAAGACAGCTGGTGGTCTGCTCCTCACTGAAAGTGCCAAGGAGAAACCTTCTATAGGAACGATAATTGCGGTAGGACCTGGTGCTTATGATGAAGAAGGAAAGAGGAAGCCTATGTCAGTAACTGCTGGAAATACTGTTCTATACTCGAAATTTGCTGGTAATGAATTTAAAAGTGGTGATGGATCTGAATACGTGACATTGAGAGTGTCGGATGTGTTGGCTGTACTCTCTTAG___CTCTAATGTTGAATGCTCAGTAATTGTTGTTAGTGCGGCTTTTTAATTGGATGTTGTGGAAGAATGTGAGAACTGAAGTGTGTCAAACCATGGGCATATGCAACTGTCCAGAGTAAATTTGCGAGCAATTTTATGTGCATAACAAGTGCAAGCATATGCAGAAAATCAGTATAATATATGCAAGTCAATACTTAATTTTGGGCCTTGTAATTAATAATGCTGGACACATCATTTTGCATCCAAACTGTAAATTCAATTCATTAGTGTGGCTCCTAACGCACCAACGAAATAGGATAGAGATGTTAATTCAAGGTTTAAGCGTTATAATAATATTCTATTAATGGGCTTGTTATATACTTGGCTCTGAACTTTCTGTCTGAGAGTTCTGTAGAGCTGTAGAAAAATATATAAAACTtTTGATCGGATTGAGTAGTGTGTGGACAGATTACACTCTGGATTGTGGATAGCTAATGGGACATGACAGATACGGTTGATATTAAC

Fln Alignment:

Contig5250___MATSQMGRGLTLKSYEGLRPAFPXXXXXXXXXXSLRRFSCTTLSVRAATSVASKFSTLKPLGDRVLIKLKQAEEKTQGGILLPATSQKRPEGGEVVALGDAKTVGKTQIPLSVPLGANIVYSKWAGTEIEFNGVNHLLVKEDDIVGVLDTDDIKDLKPLNDRVLIKVAVAEEKTAGGLLLTESAKEKPSIGTIIAVGPGAYDEEGKRKPMSVTAGNTVLYSKFAGNEFKSGDGSEYVTLR
A9NV77_________________MATSQMGRGLTLKSYEGLRPSLASKPSMASSSAGLRRFRCTTLSVRAATSVAPKFSTLKPLGDRVLIKLKQAEEKTQGGILLPSTAQKRPEGGEVVALGDAKTVGKTQVPLSVQIGANIVHSKWSGTEIEFNGVNHLLVKEDDIVGVLDTDDIKDLKPLNDRVLIKVTEAEDKTSGGLLLAESAKEKPSIGTIIAVGPGAYDEEGKRKPMSVTAGNTVLYSKFAGNEFKSGDGSEYVTLR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
961	80			20	0.995493
1082		10	90		0.90298
1083		10		90	0.90298
1085			90	10	0.90298
1323	14	85			0.999981
1324	14	85			0.999981
1325	14	85			0.999981
1329	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain