SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene5041

Length: 1042 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene5041

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1796	6/12
SustainPine v2.0	sp_v2.0_unigene32980	6/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYBPA1 protein n=2 Tax=Vitis vinifera RepID=A4F4L3_VITVI	-	-	3.0e-28	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	myb-like transcription factor 2	-	-	1.06543e-28	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	1.06543e-28	91%
Blast2go	nucleus	GO:0005634	Cellular Component	1.06543e-28	91%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, your sequence is shorter than subject: 243 - 392

Fln protein: MGRSRRCSTDEGSNRAAWTTKEDMILRDYINIHGVQGGWTSVRDQTALNRSGKSCRLRWMNYLRPNIKRGNISPEEDDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLRKNIGALNRRDRSEAKMTEEDMGVSPRLDLVGANQIAVNIENNVTVAQSFDEQSRALLQEDLTMEMPSDHHNNMASSILEDEELVFKHRGVTSEGLLGFDCAVQFPLSPISSSIEYQMSCLFSTLAHV*

Protein Length: 244

Fln nts: ATGGGGAGAGCAGCAGGGGAGCAAGATTGATTGTATAGAGCTTATGACATTGTGGCATA_-_ATGGGTAGATCTCGTCGTTGTTCAACAGATGAGGGCTCCAATCGGGCAGCTTGGACAACAAAAGAAGATATGATTCTGAGGGATTACATTAACATTCATGGAGTGCAGGGAGGTTGGACATCAGTTCGTGACCAGACAGCTCTGAACCGAAGTGGAAAGAGTTGCAGACTACGTTGGATGAATTATCTTCGTCCAAACATAAAACGAGGAAATATTTCTCCCGAAGAGGACGATCTCATAATTAGATTGCATCGTCTTCTGGGCAATCGGTGGTCACTCATAGCAGGAAGACTACCTGGTCGAACAGATAATGAAATAAAGAACTACTGGAATACTCATTTGAGAAAGAATATTGGAGCTCTGAATAGACGAGATCGGAGCGAGGCGAAAATGACTGAAGAAGACATGGGTGTTTCTCCGCGTCTCGATCTCGTCGGAGCAAATCAAATTGCTGTAAATATTGAAAATAATGTAACTGTTGCTCAGTCCTTTGATGAACAGTCGAGGGCACTGTTACAAGAAGATTTAACTATGGAAATGCCCTCTGATCATCACAACAACATGGCCAGTTCGATATTGGAGGACGAAGAGTTAGTTTTCAAACACCGCGGGGTAACCTCTGAAGGCTTATTAGGTTTCGACTGTGCTGTTCAGTTCCCTTTATCTCCAATTTCTTCGTCCATTGAATATCAAATGAGTTGTCTGTTTTCCACACTGGCGCATGTGTAAAGTTGTTCAAAGTAAACCAGCATCATGACATGCATGCTCAGTTGGAGGTGGATAGATGGACGAGTACTCAAACATAGTATATTTCTGTTATTTAACAGGGTAGATAGTCTGATAGACCGAGGCAGAGATGGTCTCTATATATCAGGTAAGATAGACCGAGGGGAGAAGCGTCTCTAAGATAATTTTACGTTTTCTTGTTGCTGTATATTTGCTTTCTTAGTTGAGATATCTATGTGAATAAAGTAGTAGGTCAG

Fln Alignment:

Contig5041___MGRSRRCSTDEGSNRAAWTTKEDMILRDYINIHGVQGGWTSVRDQTALNRSGKSCRLRWMNYLRPNIKRGNISPEEDDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLRKNIGALNRRDRSEAKMTEEDMGVSPRLDLVGANQIAVNIENNVTVAQSFDEQSR
B8LMJ6_________________MGRSPCCSK-EGLNRGAWTKKEDMILSEYIRIHG-DGGWRNLPKKAGLKRCGKSCRLRWLNYLRPDIKRGNICPDEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKL-SLNESQHKTSQ------------NLISSSKSPLPVQTRVFKASPFPVQTR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
630	33			66	0.997452
676	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain