SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4991

Length: 780 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4991 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12676	19/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor eIF-3 subunit 10 [Arabidopsis thaliana] sp\|Q9LD55.1\|EIF3A_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName:	-	-	2.0e-29	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	81%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	81%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
533		76		23	1.0
635		16		83	0.994512
645		16	83		0.994512
646		16		83	0.994512
647		16	83		0.994512
648	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain