SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4951

Length: 1167 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4951

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13971	28/28

Source	Descriptions	Term	Type	Identity
AutoFact	GTPase [Glycine max]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ras-related protein raba5d-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	85%
Blast2go	response to heat	GO:0009408	Biological Process	85%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	85%
Blast2go	inter-Golgi cisterna vesicle-mediated transport	GO:0048219	Biological Process	85%
Blast2go	protein transport	GO:0015031	Biological Process	85%
Blast2go	GTPase activity	GO:0003924	Molecular Function	85%
Blast2go	GTP binding	GO:0005525	Molecular Function	85%
Blast2go	Golgi stack	GO:0005795	Cellular Component	85%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	Golgi-associated vesicle	GO:0005798	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPI9

Fln msg:

Fln protein: MEDDPGEDYLFKVVLIGDSAVGKSNLLSRYARNEFHMNSKATIGVEFQTQSMEFDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRHTFESVGRWLDELKMHSDMNVVTMLVGNKCDLESLREVPVEESKALAEAEKLFFIETSALNATNVNDAFQIVIKEVYNNMSRKALNSGSYKSKLLSNGSTSVSLVQNGDAATKTGLKNCNKNGSILDVLC*

Protein Length: 227

Fln nts: CGCTGCAGACAGCCACTTAGCGAGCCGCTTTCCGGAGAATTTGGTAACGGGCATTTGAAAAGAAGCGTACCAGCTGCTTATCACATGGTTTTTCTGACTACCTCTTCACGCATTTTCCGTTCTCAGATAGCCACAGCTGAACCCATGATATCCCTTTAAATTTGTCTCGCCCGCTAAGTTATGGGGACCTCAAATCACCCTTTCCCGTTGGAAACAAATGCTCAGAGATCCCCACACTGCACTACATTGAGCCGTTCAGCAGCTAAAAGTGCCTTACATTTCACTTTAAGCTCTACCCATTTCATTTCTGCGCTTTAACAAGCCCCCTGTGTGCGTTTCTAGTAGCA_-_ATGGAGGACGATCCTGGTGAAGATTACTTGTTCAAGGTGGTGTTGATAGGGGATTCTGCAGTGGGGAAGTCGAATCTGCTGTCGAGGTATGCCAGGAATGAGTTTCACATGAATTCCAAGGCCACAATAGGTGTGGAGTTCCAGACTCAGAGTATGGAGTTTGATGGGAAGGAGATCAAGGCACAAATATGGGACACTGCAGGCCAGGAGAGGTTCCGGGCTGTCACTTCTGCTTACTATAGGGGAGCTGTTGGTGCCCTCGTTGTTTATGATATCAGCAGGAGGCACACATTTGAGAGTGTGGGTCGTTGGCTTGATGAGCTCAAAATGCATTCCGACATGAATGTTGTTACAATGTTGGTTGGCAACAAATGTGATTTGGAGTCTCTGAGAGAAGTACCAGTTGAAGAAAGCAAAGCCCTTGCTGAAGCAGAGAAGCTGTTTTTCATAGAAACTTCAGCATTAAATGCGACAAATGTGAATGATGCCTTTCAGATTGTAATCAAGGAGGTTTACAATAACATGAGTCGTAAAGCCTTAAACTCAGGTTCTTACAAATCTAAATTGCTATCAAACGGAAGCACTAGTGTCAGCCTTGTGCAGAATGGGGATGCTGCAACAAAGACAGGGTTAAAAAATTGTAATAAAAATGGAAGCATCTTGGATGTATTGTGTTGA___CAGTCAAGCTTGTAGGGTCCTCTGTTTTTGATCTGCATGTGGCTAGAAAGCTATTGTGGAGAGGAATCGGAGGTTTTGTTTGTCTATTTGTGGAGGATCTATGACATTTGCTGGATCCTAATGCTCTATGTATTCATCAGTG

Fln Alignment:

Contig4951___MEDDPGEDYLFKVVLIGDSAVGKSNLLSRYARNEFHMNSKATIGVEFQTQSMEFDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRHTFESVGRWLDELKMHSDMNVVTMLVGNKCDLESLREVPVXXXXXXXXXXXXFFIETSALNATNVNDAFQIVIKEVYNNMSRKALNSGSYKSKLLSNGSTSVSLVQNGDAATKTGLK
B8LPI9_________________MEDDPGEDYLFKVVLIGDSAVGKSNLLSRYARNEFHMNSKATIGVEFQTQSMEFDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRHTFESVGRWLDELKMHSDMNIVTMLVGNKCDLETLREVPIEESKALAEAEKLFFIETSALNATNVNDAFQIVIKEVYNNMSRKALNSDSYKPKLLSNRSTKVSLVPNGDAATKTGLK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
817	85		14		0.993533
1010	33	66			0.997452
1012			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain