SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4935

Length: 1145 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4935

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9945	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	CBS domain-containing protein [Arabidopsis thaliana] gb\|AED96402.1\| CBS domain-containing protein [Arabidopsis thaliana]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVG5

Fln msg: your sequence is shorter than subject: 263 - 432

Fln protein: EFCWINQEDVVRFLLGFIGVFSPLPSMTIEDLGIVNREVLTVEYDKPASSALQMIQLASHTQTAVAVVEHDPLQGPKLIGEISPSTLMYCDETVALALATLSAGDFMAYVDCGGPPESLVELVRRRINQKMGPMGEGEQDQNAGNPIPGSDQPLTERDSLSTDSWEESSDEESAALSPSGPLRTSNKWSRSCSINKFGYASRGRRVAPLTCKPWSSLVAVMVQALAHRVNYVWVTDEDSNLVGMVTFLDILDVFWNHLQSLN*

Protein Length: 264

Fln nts: GGAATTCTGCTGGATAAATCAGGAGGACGTTGTGAGATTCCTTTTGGGTTTTATAGGAGTGTTCTCTCCCCTTCCCTCTATGACAATTGAAGATCTGGGGATAGTAAATCGTGAGGTTCTTACGGTGGAGTATGATAAACCTGCAAGTAGTGCATTGCAGATGATCCAACTCGCATCCCACACCCAAACTGCAGTAGCAGTAGTGGAGCATGACCCCTTGCAGGGTCCCAAGCTGATTGGTGAGATATCGCCTTCTACTTTGATGTACTGTGATGAGACTGTAGCCCTTGCCCTTGCCACCCTTTCTGCTGGGGATTTCATGGCCTATGTTGACTGTGGAGGGCCCCCAGAATCTCTTGTTGAACTTGTGAGGAGGAGGATAAATCAGAAGATGGGTCCTATGGGAGAAGGTGAGCAGGATCAAAATGCAGGGAATCCTATACCTGGATCAGATCAGCCTCTCACAGAGAGAGATAGCCTGTCTACGGATTCCTGGGAAGAATCTTCCGATGAAGAGTCTGCTGCACTGTCACCATCTGGGCCTCTCAGAACTTCCAACAAATGGTCTCGTTCCTGTTCCATCAATAAGTTTGGATATGCTTCCAGGGGTCGCAGAGTGGCACCTCTGACCTGTAAACCCTGGAGCTCTCTGGTTGCTGTAATGGTGCAAGCTCTTGCTCATAGAGTGAATTATGTGTGGGTGACTGATGAGGATTCCAATTTGGTTGGGATGGTAACTTTCTTAGACATTCTAGATGTTTTCTGGAATCATTTGCAATCTTTAAATTGA___CACCAGAGCAGAGAAACCTTTCTTCCTTAAGTTTTTTGTCGTTATTCTACTCTCGTAAGCTTGTAGTTGCAGTGCAATTATTTGGCCTCTTGGTTATGAGAATGTGGAGGATAGGCCTCAACTTGTGTTATTTGTAATTTTTGTACGGAATATTTATAGTTTTTGGAGCAATCAGAGAGACACCTCGAGGACATGAGGCAAAGATATCGAGATTCTTGAGTAGGAGCTTTTCTCTAAGGAACTCTATACACAAATCCAGAGGATTCTCCCTGGAGTATATGTACTTTTTTGCAAGGACCTGTTATGTTAAATTTCAGAGTTTCCTCTTATCTAATAATGCTTCTGGATTGTTTAA

Fln Alignment:

Contig4935___EFCWINQEDVVRFLLGFIGVFSPLPSMTIEDLGIVNREVLTVEYDKPASSALQMIQLASHTQTAVAVVEHDPLQGPKLIGEISPSTLMYCDETVALALATLSAGDFMAYVDCGGPPESLVELVRRRINQKMGPMGEGEQDQNAGNPIPGSDQPLTERDXXXXXXXXXXXXXXXXXXXXXGPLRTSNKWSRSCSINKFGYASRGRRVAPLTCKPWSSLVAVMVQALAHRVNYVWVTDEDSNLVGMVTFLDILDVFWNHLQSLN
A9NVG5_________________EFCWINQEDVVRFLLGFIGVFSPLPSMTIEDLGIVNREVLMVEYDKPASSALQMIQLASNTQTAVAVVEQDPLQGPKLIGEISPSTLMYCDETVALALATLSAGDFMAYVDCGGPPESLVDLVRRRINQKMGPMGEGEQDQNPGNPIPGSDKPLTETDSLSTDSWEESSDEEFSVQSPSGPLRNSNKWSRSCSFNKFGYASRGRRVAPLTCKPWSSLVAVMVQALAHRVNYVWVTDEDSNLVGMVTFLDILDVFWNHLQSLD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
43			50	50	1.0
535		80		20	0.995493
536		80	20		0.995493
537	80		20		0.995493
538			20	80	0.995493
663	87	12			0.992554
956			25	75	0.996473
958			75	25	0.996473
1023		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain