SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4932

Length: 965 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4932

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13258	17/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[F] COG0775 Nucleoside phosphorylase	-	-	2.0e-11	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	protein	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylthioadenosine nucleosidase.	EC:3.2.2.16	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	81%
Blast2go	ethylene biosynthetic process	GO:0009693	Biological Process	81%
Blast2go	response to deep water	GO:0030912	Biological Process	81%
Blast2go	L-methionine biosynthetic process from S-adenosylmethionine	GO:0019284	Biological Process	81%
Blast2go	methylthioadenosine nucleosidase activity	GO:0008930	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside phosphorylase domain	IPR000845	-	0.0	-
Sma3	Nucleoside phosphorylase	IPR018017	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPY3

Fln msg:

Fln protein: MAPPQDPIANVQTSSEGEERAISSVLMFIAMQAEALPLVKKFNLSEVEDSVFPKGVPWIRYHGTYKDLEINIVIPGKDTIFGIDSVGTVTAALVTYASVQALKPDIILNVGTAGGFKDKGACIGDVFLATDVAFHDRRIPIPVFDQYGVRARPTFSTPNLVKELGLKVGKLSTGDSLDMSSQDEELIRANDTAVKDMEGAAVAYVTELLSVPAIFVKAITDVVDGEKPTAEEFLENLSTVTLALDQAVTRVVDFINGKRLSDL*

Protein Length: 265

Fln nts: TGCAATTGGATCGACC_-_ATGGCACCTCCGCAGGATCCAATTGCGAATGTGCAGACATCATCAGAAGGTGAAGAACGTGCCATTTCCAGCGTTCTCATGTTCATAGCCATGCAGGCAGAAGCCCTTCCTTTAGTAAAAAAGTTTAATCTTTCGGAGGTCGAAGATTCAGTGTTTCCAAAGGGTGTCCCTTGGATTAGATACCATGGAACATACAAAGATCTTGAAATTAATATTGTTATTCCAGGAAAGGATACAATATTTGGCATTGATAGTGTTGGAACAGTAACGGCAGCTCTTGTGACTTATGCTTCAGTACAGGCTCTAAAGCCTGATATTATTTTAAATGTAGGCACTGCTGGTGGCTTCAAGGACAAGGGAGCATGCATTGGTGATGTGTTTCTGGCAACTGATGTCGCTTTTCATGACCGCAGAATACCAATTCCTGTATTTGATCAGTATGGAGTAAGAGCCAGACCAACATTTTCAACGCCTAATCTTGTTAAAGAACTTGGTCTTAAGGTTGGAAAATTATCTACTGGTGATTCTCTTGACATGTCTTCCCAAGATGAAGAATTGATTAGGGCTAATGACACGGCAGTCAAGGACATGGAGGGTGCTGCAGTTGCTTATGTGACGGAACTTTTGTCAGTTCCTGCTATATTTGTCAAGGCTATTACAGATGTTGTTGATGGAGAAAAACCAACTGCAGAGGAGTTCCTGGAAAATCTATCTACTGTAACTCTAGCATTGGATCAGGCAGTCACTCGAGTTGTGGACTTCATAAATGGGAAGAGACTCTCTGATCTTTAA___TCATTCAATGTTGAATTAGGATTTTATTTGCCTGTGTTTGGGTCAACACACTAATAGTAATGTTCAATTTGTTGTCATTGTCGTCGAGAGACTGTATATTAATATTACTTTGTTGCATAATGAATGGAATTCACAAAGTTTATCCAGAGGTTGCACT

Fln Alignment:

Contig4932___MAPPQDPIANVQTSSEGEERAISSVLMFIAMQAEALPLVKKFNLSEVEDSVFPKGVPWIRYHGTYKDLEINIVIPGKDTIFGIDSVGTVTAALVTYASVQALKPDIILNVGTAGGFKDKGACIGDVFLATDVAFHDRRIPIPVFDQYGVRARPTFSTPNXXXXXXXXXXXXSTGDSLDMSSQDEELIRANDTAVKDMEGAAVAYVTELLSVPAIFVKAITDVVDGEKPTAEEFLENLSTVTLALDQAVTRVVDFINGKRLSDL
A9NPY3_________________MAPPQDPIANVQTSSEGEERAISSVLIIIAMQAEALPLVSKFNLSEVEDSVFPKGVPWIRYHGAYKDLEINIVIPGKDTVFGIDSVGTVTAALVTYASVEAVKPDIILNVGTAGGFKDKGACIGDVFLATDVAFHDRRIPIPVFDQYGVRARPTFSTPTLVKELGLKVGKLSTGDSLDMSSQDEELIRANDTAVKDMEGAAIAYVTELLSVPAIFVKAITDVVDGDKPTAEEFLENLSTVSLALDQAVTRVVDFINGKRLSDL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
263		75		25	0.996473
312			80	20	0.995493
314	80		20		0.995493
315		80	20		0.995493
316	80		20		0.995493
399	16	83			0.994512
538	16		83		0.994512
550	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain