SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4925

Length: 1096 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4925

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17636	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	EF-hand, calcium binding motif-containing protein [Arabidopsis thaliana] gb\|AED93842.1\| EF-hand, calcium binding motif-containing protein [Arabidopsis thaliana]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNJ2

Fln msg:

Fln protein: MADGGVVVLDGSHIRNALPNLERRLEARHLDEKITAQEFLALAEAEASSILFDLDLPENLRAFVLERPQLTDIGSLQFDRETVLRKLHDYLLALADELKDDPLIVSILDGSVIRLFLEDEDDFAMLAENLFTDLDTDDSGKLSRNELRSALVQMGVEMGVPPFSVTPEGDALLTNILKKHGAEGTEELGQAQFAQLLQGILQDLADSLALKPIVIIQDIKVFNGSQLRKFLADDKLLEQVTNLMFQQLDVNKDGKVSKSELRPFFEMKGSEWGLPPLEANETVELLYDQIFASVDEDHSGQLEQNEFQGLIKGILETFAEQLAANPIFHDLEAAE*

Protein Length: 337

Fln nts: ATGGGGATTTATCTCCGTTTATGTCGATTTTCCCGATCAGAATTTGAGTTTTTCCCTGATCTTTGTTGCA_-_ATGGCGGACGGAGGCGTTGTGGTGTTGGACGGATCGCATATCAGAAATGCGTTGCCAAATCTTGAGCGAAGGCTGGAAGCGCGCCATCTGGACGAAAAAATCACGGCTCAGGAATTCTTAGCCCTAGCAGAGGCCGAAGCTTCCTCAATTCTTTTCGACCTTGACTTGCCGGAGAATCTCAGGGCCTTCGTGTTGGAGAGACCCCAGTTGACGGACATTGGCTCCCTGCAATTTGACAGAGAAACCGTCCTTCGCAAGCTCCACGATTATCTGCTTGCTCTTGCAGACGAGCTCAAAGATGATCCATTGATTGTGTCTATTTTGGATGGGAGTGTCATAAGGCTTTTCCTAGAGGATGAAGATGATTTTGCTATGTTGGCAGAAAATCTGTTCACAGATCTTGATACAGATGACAGTGGCAAGCTTAGCAGAAATGAGTTGCGGTCTGCCCTTGTTCAGATGGGAGTTGAGATGGGTGTTCCTCCCTTCTCAGTTACCCCTGAAGGTGATGCTCTTCTGACAAACATTTTAAAGAAGCATGGGGCAGAAGGGACCGAAGAATTAGGGCAGGCTCAGTTTGCTCAGTTACTTCAGGGTATCTTGCAAGATCTGGCTGATTCTCTGGCTTTAAAGCCCATTGTTATCATCCAAGATATTAAGGTCTTTAATGGCTCACAACTGAGAAAGTTTCTGGCAGATGACAAACTTTTAGAGCAAGTGACAAATCTTATGTTCCAGCAGTTGGATGTGAATAAAGATGGTAAAGTGAGCAAATCGGAACTACGGCCTTTCTTCGAGATGAAAGGTTCAGAATGGGGCCTGCCTCCTTTAGAAGCCAACGAAACAGTTGAGTTACTCTACGACCAGATCTTTGCGAGTGTCGATGAAGACCATAGTGGCCAGCTTGAACAGAATGAGTTTCAGGGGCTTATTAAGGGTATACTGGAGACTTTCGCTGAGCAACTTGCTGCAAATCCCATATTTCATGATCTGGAAGCTGCTGAGTAG___AAATGTTCTTGGATAATG

Fln Alignment:

Contig4925___MADGGVVVLDGSHIRNALPNLERRLEARHLDEKITAQEFXXXXXXXXXXILFDLDLPENLRAFVLERPQLTDIGSLQFDRETVLRKLHDYLLALADELKDDPLIVSILDGSVIRLFLEDEDDFAMLAENLFTDLDTDDSGKLSRNELRSALVQMGVEMGVPPFSVTPEGDALLTNILKKHGAEGTEEXXXXXXXXXXXXXXXDLADSLALKPIVIIQDIKVFNGSQLRKFLADDKLLEQVTNLMFQQLDVNKDGKVSKSELRPFFEMKGSEWGLPPLEANETVELLYDQIFASVDEDHSGQLEQNEFQGLIKGILETFAEQLAANPIFHDLEAAE
A9NNJ2_________________MADGGVVVLDGSHIRNALLNLERRLEARHLDEKISGPEFIALAEAEASSILFDLGLPENLRALVLERPELTDIDSLQFDRETVLRKLHDYLLALADELKDDPLIVSILDGSVIRLFLEDEDDFAMLAENLFTDLDTDDSGKLSRNELRSALVQMGVEMGVPPFSVTPEGDALLTNILKKHAAEGTEELGQAQFAQILQGILQDLADSLALKPIVIIQDIKVINGSQLRKFLADDKLVEQVTNLMFRELDVNKDGKVSKTELRPFFEIKGSEWGLPPLEANETVGLLYDQIFASVDEDHSGQLEQNEFQSLVKGILETFAEQLAANPIFHDLEAAD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
696		75		25	0.996473
738	83		16		0.994512
847	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain