SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4917

Length: 1282 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4917

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5829	22/24
SustainPine v2.0	sp_v2.0_unigene22987	1/24

Source	Descriptions	Term	Type	Identity
AutoFact	xyloglucan endotransglycosylase/hydrolase precursor XTH-39 [Populus tremula]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 28-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	75%
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	75%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	75%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	75%
Blast2go	Glycosaminoglycan degradation	00531	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	75%
Blast2go	cellular glucan metabolic process	GO:0006073	Biological Process	75%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	75%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	75%
Blast2go	cell wall	GO:0005618	Cellular Component	75%
Blast2go	apoplast	GO:0048046	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUC4

Fln msg:

Fln protein: MMLAVALVCIWVCGLFSQPGSAVGSSRPRLAGKLVTENFAGLQFEEAYTSLFGDENVKVAEDGKTVMLSLDKRTGSGLLSQDMYMYGLFSASMKLPDDYTAGVVAAFYTSNGDMFQGTHDELDFEFLGNIRGKEWRIQTNVYGNGSTAYGREERYTLWFDPTEDFHQYTILWTEKSTVFFVDDVPIREIPRTDAMGAHYPGKPMSVYATVWDGSDWATKGGRYRVNYKYSPFVVTLANLILEGCAVDPLEQFPAVSCSADTTSSASLSELAELSEDQKALMEWFRGKYISYSYCDDAVRYPSNPSDCPPRDPHKKIATAHVKFGHHQRHRKKNRKSRRSSSSAASAAVSL*

Protein Length: 352

Fln nts: CAAACGAATCCCAATGGGGAAGCTCTTCTTTGAAAGATTTTTTGTTGGGCTGTGGGTTGAAGTATTGCAGAAATTAAA_-_ATGATGTTGGCAGTGGCTCTGGTGTGTATTTGGGTCTGTGGGCTTTTCTCACAACCTGGTTCTGCAGTTGGGAGTTCTCGGCCGAGATTGGCCGGGAAGCTCGTGACTGAAAATTTTGCCGGGCTTCAGTTCGAGGAAGCATATACGTCCTTGTTCGGCGATGAAAATGTCAAGGTGGCAGAGGATGGCAAGACCGTCATGCTTTCACTCGATAAGCGTACTGGCTCAGGATTGCTGTCTCAGGACATGTATATGTATGGCTTGTTCAGCGCTTCTATGAAGCTTCCCGATGATTATACTGCAGGCGTTGTGGCTGCGTTTTATACATCAAATGGGGACATGTTCCAGGGTACCCACGACGAGCTGGACTTTGAATTCTTGGGCAATATCAGAGGCAAAGAATGGAGAATCCAGACCAACGTTTATGGCAACGGGAGCACGGCCTATGGACGCGAGGAACGGTACACGCTCTGGTTCGACCCAACTGAAGATTTTCATCAGTACACCATCCTTTGGACAGAGAAAAGCACAGTATTCTTTGTGGACGACGTCCCCATAAGAGAAATTCCGAGAACAGACGCCATGGGCGCTCACTATCCAGGGAAGCCCATGTCTGTATATGCTACCGTATGGGACGGTTCAGACTGGGCCACCAAAGGAGGGCGATACAGAGTCAATTACAAGTATTCCCCTTTCGTTGTCACGCTGGCCAACCTTATCCTGGAAGGTTGCGCTGTTGATCCCCTGGAGCAGTTTCCCGCAGTCTCTTGCTCAGCTGACACAACCTCCTCGGCCTCACTTTCTGAACTTGCCGAGCTCTCGGAAGACCAGAAGGCATTAATGGAATGGTTCAGAGGCAAATATATTTCCTACTCTTACTGCGACGATGCTGTCCGCTATCCTTCAAATCCTTCCGACTGTCCTCCGAGGGACCCTCACAAGAAAATCGCCACTGCACATGTCAAGTTCGGTCACCACCAGAGGCATCGCAAGAAGAATAGGAAATCCCGCCGCTCTTCTTCCAGTGCGGCTTCGGCTGCTGTTTCTCTCTAA___TCACCTACTCTGCTCTGCTCTACTATTCCAATACAGATTTTATATTATACTCTTCTGCTGTCTGTTTCTCTGCTTGTACAGAAGACCTCGATTTCGCTGCTCTCATGATGGTGGTATTAGACCATACGATTGTAATTCTACGCAGTTATTA

Fln Alignment:

Contig4917___VALVCIWVCGLFSQPGSAVGSSRPRLAGKLVTENFAGLQFEEAYTSLFGDENVKVAEDGKTVMLSLDKRTGSGLLSQDMYMYGLFSASMKLPDDYTAGVVAAFYTSNGDMFQGTHDELDFEFLGNIRGKEWRIQTNVYGNGSTAYGREERYTLWFDPTEDFHQYTILWTEKSTVFFVDDVPIREIPRTDAMGAHYPGKPMSVYATVWDGSDWATKGGRYRVNYKYSPFVVTLANLILEGCAVDPLEQFPAVSCXXXXXXXXXXXXXXXXXXXQKALMEWFRGKYISYSYCDDAVRYPSNPSDCPPRDPHKKIATAHVKFGHHQRH
A9NUC4_________________VALVFIWVCG-FSQLASAVGSSRPRLAGKRVTENFASLRFEEGYTSLFGEDNVKVAEDGKAVMLSLDKRTGSGLLSQDMYMYGLFSASIKLPDDYTAGVVVAFYTSNGDIFQGTHDELDFEFLGNIRGKEWRIQTNVYGNGSTAFGREERYTLWFDPTEDFHQYTILWTDKRTLFFVDDVPIREIPRTAAMGAHYPSKPMSVYATVWDGSDWATKGGRYRVNYKYSPFVVSLSNLVLEGCAVDPLEQFHTVSCPADTTSSDSLSQFSELSEDQKALMEWFRSKYISYSYCDDDVRYPTTPADCPPRDPHKKIATAHVRFGHHQRH

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
220	83	16			0.994512
394	20			80	0.995493
658	33		66		0.997452
808	83		16		0.994512
839	10	90			0.90298
840		90		10	0.90298
841		90	10		0.90298
843		90	10		0.90298
850		20		80	0.999996
854		10		90	0.90298
888	88		11		0.923564
1136		16		83	0.994512
1172	80			20	0.995493
1173	20			20	0.99255
1178	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain