SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4892

Length: 564 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4892
AGCACAGGTGGAAGTGGAAGTATTGGTGGAGTAACAAATGTTCGTGTAGCGGTGATAGGAGACAGTGGTACTGGGAAGTCTAGTTTGATTGTTTCTGTAGCCACTGATTCGTTTCCAGAGAGGGCTCCTCCACTTTTGCCCCCAACAAGACTCCCTCCAGATTTCTATCCTGATCGTGTTCCACTCACCATAATTGATACATCATCCAGACCCGAGGACCGTAACAAGCTAGGAGCAGAATGCAAGAAGGCAGATGCAATTGTTCTAACATATGCATGTGAACAACCTATCACACTTGAGCGTCTGTCTTCCTACTGGCTACCAGAGCTTCGTCGCTTAGAAGTGAAAGTGCCAGTCATTGTGGTTGGTTGTAAATTAGATCTGCGAGATGATCAACAACTAAGTTTGGAGCAAGTAATGACACCAATCATGCATCAGTTTCGAGAGATTGAGACATGTATAGAGTGTTCAGCACTGAAGCAGATTCAGGTTGCAGAAGTTTTTTACTATGCTCAAAAAGCAGTTCTTCATCCAACAGCACCTTTATTTGATCAAGAAACCCAA

Ace file of the UniGene biog2_v2.0_unigene4892 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8406	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial Rho GTPase n=2 Tax=Selaginella moellendorffii RepID=D8RQC7_SELML	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion transport along microtubule	GO:0047497	Biological Process	83%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	83%
Blast2go	pollen tube growth	GO:0009860	Biological Process	83%
Blast2go	mitochondrion organization	GO:0007005	Biological Process	83%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	83%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	83%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	83%
Blast2go	GTP binding	GO:0005525	Molecular Function	83%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF hand associated, type-1	IPR013566	-	-
Sma3	EF hand associated, type-2	IPR013567	-	-
Sma3	Mitochondrial Rho-like	IPR013684	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A849

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, W2: There is no M at the beginning,

Fln protein: STGGSGSIGGVTNVRVAVIGDSGTGKSSLIVSVATDSFPERAPPLLPPTRLPPDFYPDRVPLTIIDTSSRPEDRNKLGAECKKADAIVLTYACEQPITLERLSSYWLPELRRLEVKVPVIVVGCKLDLRDDQQLSLEQVMTPIMHQFREIETCIECSALKQIQVAEVFYYAQKAVLHPTAPLFDQETQ

Protein Length: 189

Fln nts: AGCACAGGTGGAAGTGGAAGTATTGGTGGAGTAACAAATGTTCGTGTAGCGGTGATAGGAGACAGTGGTACTGGGAAGTCTAGTTTGATTGTTTCTGTAGCCACTGATTCGTTTCCAGAGAGGGCTCCTCCACTTTTGCCCCCAACAAGACTCCCTCCAGATTTCTATCCTGATCGTGTTCCACTCACCATAATTGATACATCATCCAGACCCGAGGACCGTAACAAGCTAGGAGCAGAATGCAAGAAGGCAGATGCAATTGTTCTAACATATGCATGTGAACAACCTATCACACTTGAGCGTCTGTCTTCCTACTGGCTACCAGAGCTTCGTCGCTTAGAAGTGAAAGTGCCAGTCATTGTGGTTGGTTGTAAATTAGATCTGCGAGATGATCAACAACTAAGTTTGGAGCAAGTAATGACACCAATCATGCATCAGTTTCGAGAGATTGAGACATGTATAGAGTGTTCAGCACTGAAGCAGATTCAGGTTGCAGAAGTTTTTTACTATGCTCAAAAAGCAGTTCTTCATCCAACAGCACCTTTATTTGATCAAGAAACCCAA

Fln Alignment:

Contig4892___VRVAVIGDSGTGKSSLIVSVATDSFP-ERAXXXXXXXXXXPDFYPDRVPLTIIDTSSRPEDRNKLGA-ECKKADAIVLTYACEQPITLERLSSYWLPELRRLEVKVPVIVVGCKLDLRDDQQLSLEQ-----VMTPIMHQFRE---IETCIECSALKQIQVAEVFYYAQKAVLHP
D5A849_________________IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPNVPIILVGTKLDLRDDKQFFADHPGAAPITTPQGEELKKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain