SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4739

Length: 1037 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4739 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3214	2/11
SustainPine v2.0	sp_v2.0_unigene30461	9/11

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB22 (Fragment) n=1 Tax=Pinus taeda RepID=C0JTE2_PINTA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	myb transcription factor	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTK0

Fln msg: Separated hits, possible frame ERROR between 529 and 534, atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 217 - 242

Fln protein: NKGGWTKEEDDKLIQYIQAHGEGSWRSLPSTTGLRRCAKSCRLRWINYLRPNLKRGNFSEDEDDLILRLHALLRNRWSLIAGRLPGRTDNEIKNYWNSHLKRKLISLGVDPLTHRPFPKTSQRHPSTPQNVGVAETARSHEVVQHFFDCPSELSTKSDLVSDAASGxxxQEEPPRFNLNLNLELSITRSTVRVTGNEDGMGSDQGEGNISAGYLCR*

Protein Length: 218

Fln nts: AGGGCCTTGTTGCGCAAACAGTGACtGAAACAAAGGAGGCTGGACCAAAGAAGAGGATGACAAGCTTATCCAATACATTCAGGCTCATGGAGAGGGTTCCTGGCGCTCTCTGCCCAGTACCACAGGGCTGCGTCGGTGTGCCAAAAGTTGCAGGCTGAGATGGATAAATTATCTTCGGCCTAATCTGAAACGTGGCAATTTCTCTGAAGATGAAGACGATCTTATTCTCAGACTGCACGCACTCCTTCGAAATAGGTGGTCTTTGATAGCTGGGCGTTTGCCAGGACGAACGGATAACGAGATAAAGAACTACTGGAACTCGCATCTGAAGCGAAAACTTATCAGCTTGGGGGTCGATCCCCTAACCCATCGTCCTTTTCCAAAGACTTCTCAGCGTCATCCCTCTACTCCACAGAATGTTGGGGTGGCTGAAACAGCACGTTCGCATGAAGTTGTCCAACATTTCTTCGATTGCCCGTCGGAATTAAGCACCAAATCCGACCTAGTTTCTGATGCTGCAAGCGGACTxxxxxxACAGGAAGAGCCTCCTCGCTTCAACCTGAACCTGAACCTGGAGCTTTCAATAACTCGCTCGACAGTCCGCGTCACTGGGAACGAGGACGGTATGGGTTCCGACCAAGGAGAAGGCAATATCAGTGCTGGATATTTATGCCGTTGAGGGCCCATTTCGCATCCCTACGGGGCATACCAAGTTCTGGAGAACTTAGGATTCTCAATTTGAGTAGTTGCATAATATGACCTTCTAACGTTATCGAACAGTCCTTTGTGTAACATCGATTGAGTGTTTCATTTCTACAGATATAGGTGCACTGTTGATACATAGAATGTTGTATGCATAAGTTTGAGTGGGCAATGGAGAAAACTCGACATATAATATTGCGTGACTGGTAAGAAAGAGCTTCCTCGCTCACCGAACATTTTTATATAGTTCAATATATATTTTGTTATAATAAGAAAGTATCATCCCTGTTTGACTGCCAACCAGTTTATATATATATCTATATATAAACTTGATTTT

Fln Alignment:

Contig4739___GPCCANSD*NKGGWTKEEDDKLIQYIQAHGEGSWRSLPSTTGLRRCAKSCRLRWINYLRPNLKRGNFSEDEDDLILRLHALLRNRWSLIAGRLPGRTDNEIKNYWNSHLKRKLISLGVDPLTHRPFPKTSQRHPSTPQNVGVAETARSHEVVQHFFDCPSELSTKSDLVSDAASGLxxQEEPPRFNLNLNLELSITRSTVRVTGNEDGMGSDQGEGNIS--AGYLCR*GPISHP
A9NTK0_________________GPCCANGDRNKGAWTREEDDRLIQYIQAHGEGCWRSLPNASGLLRCGKSCRLRWINYLRPNLKRGNFSEDEDDLILKLHALLGNRWSLIAGRLPGRTDNEIKNYWNSYLKRKLISMGVDPLNHRPFQKNSRHRPSASGNVGEPGTAQSREIVPDFFHCPPELSTKSEQVSDAASGLxxRKELPRFNLNLNLELSITRPSIHAAGKEAVVNSEQGESSLSEGKGYLCRHGECPPP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
334		33		66	0.997452
339	33	66			0.997452
340			66	33	0.997452
550		20		80	0.995493
551		20		80	0.995493
552	80	20			0.995493
613		66		33	0.997452
801			20	80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
466	483	CAGGTT CAGGTT CAGGTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain