SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4722

Length: 823 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4722 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16904	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	RuBisCO large subunit-binding protein subunit alpha, chloroplastic n=9 Tax=fabids RepID=RUBA_PEA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	ru large subunit-binding protein subunit chloroplastic-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	89%
Blast2go	chloroplast organization	GO:0009658	Biological Process	89%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	thylakoid	GO:0009579	Cellular Component	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Diguanylate phosphodiesterase, EAL domain	IPR001633	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Ferredoxin thioredoxin reductase beta subunit, domain	IPR004209	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
449	80		20		0.995493
507		66		33	0.997452
536	66	33			0.997452
537	66	33			0.997452
538	66	33			0.997452
574	66		33		0.997452
635	25		75		0.996473
637	50		50		1.0
644		50		50	1.0
760		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain