SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4678

Length: 1414 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4678

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16037	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	Aminomethyltransferase n=1 Tax=Picea sitchensis RepID=D5A852_PICSI	-	-	94%
FL-Next	sp=Aminomethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	aminomethyltransferase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Glycine cleavage T-protein, C-terminal barrel	IPR013977	-	-
Sma3	Glycine cleavage T-protein, N-terminal	IPR006222	-	-
Sma3	Glycine cleavage system T protein	IPR006223	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A852

Fln msg:

Fln protein: MRMGLWQLGRLVRRSASQVENNKGRCTSIARRSYSDEASLKKTALYDFHVQNGGKMVPFAGWSMPIQYKDSIMDSTVNCRTNGSLFDVSHMCGLSLKGKDCVPFIEKLVVADVAGLSPGTGTLTVFTNERGGAIDDSIVTKVKDDHIYIVVNAGCRDKDLAHIESHMKAFKKRGGDVNWHIHDERSLLALQGPLAAPTLQKLTKEDLSKLYFSGFRMIDINGSPCYITRTGYTGEDGFEISVPSEHAVDLTKAILDRGEGKLRLTGLGARDSLRLEAGLCLYGNDMEQDITPVEAGIAWTIGKRRRAEGGFLGAEVILKQLEEGPARRRVGMISGGPPPRSHSEIMDASGNPIGEVTSGGFSPCLKKNIAMGYVKSGKHKTGTELKVSVRGKAYDATVTKMPFVPAKYYKPT*

Protein Length: 414

Fln nts: ATGGGAACGCTGTCGTCCATTGCCTTCTTTCATAAAAGGCAAACCCCCTTGTGGGAGGGGAGTTGTTTTAGTAAATTGGATTGAGATCTCTGGTACCAACCTGCTCAAACAGGCAGG_-_ATGAGGATGGGATTATGGCAATTAGGCAGATTGGTAAGGCGGAGTGCATCTCAGGTGGAAAACAACAAGGGTAGATGCACAAGCATCGCCCGAAGGTCTTACTCTGATGAGGCCTCCTTGAAGAAAACAGCCCTGTATGACTTTCATGTTCAAAATGGGGGCAAAATGGTACCTTTTGCAGGGTGGAGTATGCCCATCCAGTATAAGGACTCCATAATGGACTCCACTGTTAACTGTAGGACTAATGGAAGCCTCTTTGATGTGTCTCATATGTGTGGATTAAGCCTAAAGGGAAAAGATTGCGTTCCTTTCATTGAAAAGCTCGTGGTTGCGGATGTAGCTGGGCTTTCTCCTGGAACTGGAACTCTCACTGTTTTCACCAATGAGAGGGGAGGAGCCATTGATGATTCCATCGTTACTAAAGTGAAGGATGACCATATTTATATAGTGGTGAATGCAGGCTGCAGGGATAAGGATCTGGCACATATTGAGTCCCATATGAAGGCTTTTAAGAAGCGTGGAGGTGACGTTAATTGGCACATACACGATGAGCGATCTCTTTTAGCTCTCCAGGGTCCTCTTGCTGCCCCAACACTTCAGAAACTGACTAAAGAAGATTTGAGCAAATTATACTTCAGTGGTTTTCGAATGATTGATATCAATGGATCCCCGTGCTATATTACCAGAACAGGGTATACAGGTGAAGACGGTTTTGAAATATCAGTTCCATCAGAGCATGCAGTGGATCTTACTAAGGCTATCTTAGATAGGGGAGAAGGAAAATTAAGGTTGACAGGTCTAGGTGCTCGTGATAGTTTGAGGCTTGAAGCTGGTCTTTGTCTATATGGAAATGACATGGAGCAGGACATAACACCTGTAGAGGCTGGCATTGCTTGGACCATTGGCAAGAGAAGACGGGCAGAGGGTGGATTTCTTGGTGCTGAGGTCATACTAAAACAGCTGGAGGAGGGTCCTGCAAGGCGCAGGGTTGGCATGATTTCTGGTGGTCCACCTCCAAGGAGTCACAGTGAGATAATGGATGCTTCAGGGAACCCTATTGGGGAGGTCACCAGTGGAGGATTTAGTCCTTGCCTCAAGAAGAACATAGCCATGGGGTATGTAAAGTCAGGAAAGCATAAAACTGGGACAGAACTGAAAGTTTCGGTTCGTGGAAAAGCATATGATGCAACTGTCACTAAAATGCCATTTGTGCCAGCCAAGTACTACAAACCTACCTAA___GCCCATATATTCTTGTTGCAGCATATGGATTTTGGCCAGGTTATCTGCAAGTCTTATT

Fln Alignment:

Contig4678___MRMGLWQLGRLVRRSASQVENNKGRCTSIARRSYSDEASLKKTALYDFHVQNGGKMVPFAGWSMPIQYKDSIMDSTVNCRTNGSLFDVSHMCGLSLKGKDCVPFIEKLVVADVAGLSPGTGTLTVFTNERGGAIDDSIVTKVKDDHIYIVVNAGCRDKDLAHIESHMKAFKKRGGDVNWHIHDERSLLALQGPLAAPTLQKLTKEDLSKLYFSGFRMIDINGSPCYITRTGYTGEDGFEISVPSEHAVDLTKAILDRGEGKLRLTGLGARDSLRLEAGLCLYGNDMEQDITPVEAGIAWTIGKRRRAEGGFLGAEVILKQLEEGPARRRVGMISGGPPPRSHSEIMDASGNPIGEVTSGGFSPCLKKNIAMGYVKSGKHKTGTELKVSVRGKAYDATVTKMPFVPAKYYKPT
D5A852_________________MRMGLWQLGRLVRKSASQVEN-KGRCPSIARRSYSDEASLKKTALYDFHVQNGGKMVPFAGWSMPIQYKDSIMDSTVNCRTNGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLSPGSGTLTVFTNEKGGATDDSIVTKVKDDHIYIVVNAGCRDKDLAHIESHMKAFKARGGDVDWQIHDDRSLLALQGPLAAPTLQKLTKEDLSKLYFSSFRMIDINGSPCYITRTGYTGEDGFEISVPSDHAVDLTKAILDGGEGKLRLTGLGARDSLRLEAGLCLYGNDMEQDITPVEAGIAWTIGKRRRTEGGFLGAEVILKQLEEGPARRRVGMISAGPPPRSHSEIMDASGNPIGEVTSGGFSPCLKKNISMGYVKSGNHKTGSELKVLVRGKPYDATVTKMPFVPAKYYKPT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
789		83		16	0.994512
1142	12			87	0.992554
1143		87		12	0.992554
1144	75		25		1.0
1145		87	12		0.992554
1146	87		12		0.992554
1190		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain