SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4636

Length: 564 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4636
ATGGGCTAGCGCGAAGGAAGAAGAAAATAATGGGAGGACTTCGGAGCGGAGAGATACTGGCGCCATTAAAGCCTCCCCAGTGCATTGGCGTATAATATTTTATCCTGCCGAGGGGCATTCATTGTTAGTCGAAACCCCGACCACTTAGGCATTCGGCTCGGATGGCAAGCTTTACAGTTGCTTCAAGCGGGTTACTAACCTACCCCCTGCAAAATAAGATGGTTTCTCAATTCAGTGGTCTGAAGAGGATGTCGTTTGCTCCTAGATTGGTGGCCCTGCCATCACTTGGGTCTTTTAAGAGCGTTTTCCCAATCGTCCGCGCAGCAAAGGCAGAGACTGTGAGCAAAGTGTGTGATATTGTAATAAACCAATTGGCATTGCCAAAAGAGACAACTTTGACAGCAGAGTCCAAGTTTAGTGAGCTTGGGGCCGATTCTCTTGACACGGTGGAGATAGTGATGGCCTTGGAAGAGGAATTTAAGATCACCATGGAGGAAGAGAGCGCTGAGAGCATTACAACTGTGCAAGAAGCAGCTGATTTGATTGAGAAACTTCTTCAGAAGA

Ace file of the UniGene biog2_v2.0_unigene4636 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9977	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl carrier protein n=3 Tax=Picea sitchensis RepID=A9NK69_PICSI	-	-	1.0e-29	58%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	acyl carrier protein 1	-	-	3.73829e-36	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	3.73829e-36	71%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	3.73829e-36	71%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	3.73829e-36	71%
Blast2go	acyl carrier activity	GO:0000036	Molecular Function	3.73829e-36	71%
Blast2go	cofactor binding	GO:0048037	Molecular Function	3.73829e-36	71%
Blast2go	phosphopantetheine binding	GO:0031177	Molecular Function	3.73829e-36	71%
Blast2go	plastid	GO:0009536	Cellular Component	3.73829e-36	71%

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK69

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 134 - 151

Fln protein: MASFTVASSGLLTYPLQNKMVSQFSGLKRMSFAPRLVALPSLGSFKSVFPIVRAAKAETVSKVCDIVINQLALPKETTLTAESKFSELGADSLDTVEIVMALEEEFKITMEEESAESITTVQEAADLIEKLLQK

Protein Length: 135

Fln nts: ATGGGCTAGCGCGAAGGAAGAAGAAAATAATGGGAGGACTTCGGAGCGGAGAGATACTGGCGCCATTAAAGCCTCCCCAGTGCATTGGCGTATAATATTTTATCCTGCCGAGGGGCATTCATTGTTAGTCGAAACCCCGACCACTTAGGCATTCGGCTCGG_-_ATGGCAAGCTTTACAGTTGCTTCAAGCGGGTTACTAACCTACCCCCTGCAAAATAAGATGGTTTCTCAATTCAGTGGTCTGAAGAGGATGTCGTTTGCTCCTAGATTGGTGGCCCTGCCATCACTTGGGTCTTTTAAGAGCGTTTTCCCAATCGTCCGCGCAGCAAAGGCAGAGACTGTGAGCAAAGTGTGTGATATTGTAATAAACCAATTGGCATTGCCAAAAGAGACAACTTTGACAGCAGAGTCCAAGTTTAGTGAGCTTGGGGCCGATTCTCTTGACACGGTGGAGATAGTGATGGCCTTGGAAGAGGAATTTAAGATCACCATGGAGGAAGAGAGCGCTGAGAGCATTACAACTGTGCAAGAAGCAGCTGATTTGATTGAGAAACTTCTTCAGAAGA

Fln Alignment:

Contig4636___QNKMVSQFSGLKRMSFAPRLVALPSLGSFK---SVFPIVRAAKAETVSKVCDIVINQLALPKETTLTAESKFSELGADSLDTVEIVMALEEEFKITMEEESAESITTVQEAADLIEKL
A9NK69_________________QKQVVPRFSGLKAVSFGQQRFDFPSFQSSQCTSGALKVVCAAKPETLSKVCDIVKSQLALSDDKPLTPESKFSDLGADSLDTVEIVMALEEEFKISVEEENAGNITTVQEAADLIERL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
410		33	66		1.0
412			66	33	1.0
488	75	25			0.996473
490		25		75	0.996473
491	25		75		0.996473
492			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain