SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4596

Length: 1330 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4596

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25355	5/10
SustainPine v2.0	sp_v2.0_unigene60751	5/10

Source	Descriptions	Term	Type	Identity
AutoFact	Putative alpha-xylosidase n=1 Tax=Pinus pinaster RepID=Q8VWV9_PINPS	-	-	97%
FL-Next	tr=Putative alpha-xylosidase; Pinus pinaster (Maritime pine).	-	-	98%
Blast2go	alpha-xylosidase precursor	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	78%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		78%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		78%
Blast2go	Metabolic pathways	01100		78%
Blast2go	Alpha-N-arabinofuranosidase.	EC:3.2.1.55	-	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	xyloglucan metabolic process	GO:0010411	Biological Process	78%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	78%
Blast2go	xylan catabolic process	GO:0045493	Biological Process	78%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	78%
Blast2go	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	78%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%
Blast2go	apoplast	GO:0048046	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 31	IPR000322	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q8VWV9

Fln msg: Distance to subject end: 243 aas, your sequence is shorter than subject: 442 - 910

Fln protein: RNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGFHQCRWGYKNVSDITNVVENYNKSQIPLDVIWNDDDHMDGAKDFTLDPINYPEYKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIKHDGSPFLGQVWPGAVYFPDFLNPKTVNFWADEISRFHQMVPVDGLWIDMNEISNFCSGKCSIPTNRSCPGTGFPWDCCLDCTNITATRWDVPPYKINASGTQVPLGFKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQNLLNKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLASKRQELYLWDSVAKSARKALGLRYRLLPYLYTLNYDAHTTGAPI

Protein Length: 443

Fln nts: TAAGGAACGGAGGAATCTCTCATGGAGTTCTGCTGTTGAACAGCAATGGGATGGACGTTTTCTATACTGGTAATGCATTGACCTACAAGGTCATCGGGGGCGTGCTTGACTTCTACTTCTTTGCAGGGACTTCTCCATTGGATGTCGTTCAGCAGTATACTGCCCTCATTGGCCGCCCAGTTGCCCAGCCCTACTGGGCCTTTGGGTTTCATCAATGCAGGTGGGGATACAAGAACGTATCAGACATAACGAATGTGGTGGAAAACTATAACAAATCTCAGATACCTCTGGATGTTATATGGAACGATGATGACCACATGGATGGAGCCAAAGACTTCACCCTTGACCCTATCAACTATCCTGAATATAAGCTGCGTCCCTTCCTTGACCGAATTCATGCAAATGGAATGAGATATGTCGTCCTTATCGACCCAGGGATTGCCATTAACACGAGCTACGGCACGTTCCAGCGAGGTATGGCGGACGACGTTTTCATAAAGCACGACGGGAGTCCGTTCTTGGGTCAGGTGTGGCCCGGCGCCGTGTACTTTCCGGACTTCCTGAACCCAAAGACGGTGAATTTCTGGGCCGACGAGATCTCCCGCTTCCACCAAATGGTCCCCGTGGACGGTCTCTGGATCGACATGAACGAGATCTCCAATTTCTGCAGTGGCAAGTGCTCCATCCCCACAAACCGGAGCTGCCCGGGCACGGGTTTCCCATGGGATTGCTGCCTCGACTGCACAAACATCACCGCCACTCGATGGGACGTGCCACCCTACAAGATCAACGCCTCCGGTACCCAGGTCCCGCTGGGGTTCAAGACCATCGCCACCAGCTCCGTCCACTACAACGGCGTCCTCGAGTACGACGCCCACAGCCTCTATGGCTTATCGCAGGCCATCGCCACGCACAAGGCGCTCCAGAATCTGTTGAACAAGCGCCCATTCGTGCTCACGCGCTCCACCTTCGTGGGGTCAGGGTCATATGCTGCGCACTGGACGGGAGACAACAAAGCCACTTGGGAGGATCTCCGCTACTCAATCTCGACCATACTCAACTTCGGCATGTTCGGGATGCCCATGGTGGGCGCTGACATCTGCGGCTTCTATCCCGACACCACGGAGGAGCTCTGCGGGCGGTGGATTCAGTTGGGGGCCTTTTACCCCTTCAGCAGAGACCATTCCAATCTTGCCAGCAAACGCCAGGAGCTTTATCTCTGGGATTCCGTTGCCAAATCAGCAAGAAAGGCATTAGGGCTGCGTTACCGCCTTCTCCCTTATCTTTACACATTGAACTACGATGCCCATACTACTGGAGCACCCATTCG

Fln Alignment:

Contig4596___RNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGFHQCRWGYKNVSDITNVVENYNKSQIPLDVIWNDDDHMDGAKDFTLDPINYPEYKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIKHDGSPFLGQVWPGAVYFPDFLNPKTVNFWADEISRFHQMVPVDGLWIDMNEISNFCSGKCSIPTNRSCPGTGFPWDCCLDCTNITATRWDVPPYKINASGTQVPLGFKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQNLLNKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLASKRQELYLWDSVAKSARKAXXXXXXXXXXXXXXXXDAHTTGAPI
Q8VWV9_________________RNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGFHQCRWGYKNVSDITNVVENYNKSQIPLDVIWNDDDHMDGAKDFTLDPINYPEYKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIKHGGSPFLGQVWPGAVYFPDFLNPKTVNFWADEISHFHQMVPVDGLWIDMNEISNFCSGKCSIPTNRSCPGTGFPWECCLDRTNITATRWDVPPYKINASGTQVPLGFKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQNLLDKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLASKRQELYLWDSVAKSARKALGLGYRLLPYLYTLNYDAHTTGAPI

SNPs (tot: 3)

Position	C %	G %	T %	Probability
734	33		66	0.997452
910	80	20		0.995493
912	75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain