SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4564

Length: 544 nt

UniGene Fasta

>biog2_v2.0_unigene4564
ATTCTGCTAATTTTGTACCTGGTGCACTTGTGCGTTTCCACTATGATGTGCCAGAAGAGGAAGAGAAGGGCCCCTTTCTACGCGATGATATTATGGCTTTGTGTGATCTGCATACCCTACTTGAAGCAAAAGAAGCGGAAAAGCCAGCTGAACCTGAACCTCTTGCTGCAGAGCCTCCAGCAGAGCCTTCCAATGGTAGACCTGTTGCTAAAAAAGATGTCAAGCCCAAGTGGTTGAGAATGTAGTCTTGCGTGTAATTGATTAGGATTTGTTAAATTAACTAGCAAAGTATGAATTACGCCTTTCTGCTAAAGCTGCAAGGCTTGTATTTACGTTGATGCTCACTGTAATGCAGGGTTGACTAAATATCTTAGAAAATGCTGAATGCACTGCCTTGCTCTAAGCTGTGTTTGTATACAGTATTGCATGCAATGATTTAGGCAGAATTCTGTAGACTTCATAATTGTGTGAAGTAGGATAGACCTCATAATTGTGTGAAGTAGGATTTTCCTGTTTATAGTTTATTGTTATATTAGGAACATAC

Ace file of the UniGene biog2_v2.0_unigene4564

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9939	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	plant UBX domain-containing protein 1 [Arabidopsis thaliana] dbj\|BAB02126.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM61610.1\| unknown [Arabidopsis thaliana] gb\|AAS78923.1\| CDC48-interacting UBX-domain protein [Arabidopsis thaliana] dbj\|BAD430	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	plant ubx domain-containing protein 1	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	organ growth	GO:0035265	Biological Process	67%
Blast2go	protein complex disassembly	GO:0043241	Biological Process	67%
Blast2go	soluble fraction	GO:0005625	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	UBX	IPR001012	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWT9

Fln msg: your sequence is shorter than subject: 81 - 247

Fln protein: SANFVPGALVRFHYDVPEEEEKGPFLRDDIMALCDLHTLLEAKEAEKPAEPEPLAAEPPAEPSNGRPVAKKDVKPKWLRM*

Protein Length: 82

Fln nts: ATTCTGCTAATTTTGTACCTGGTGCACTTGTGCGTTTCCACTATGATGTGCCAGAAGAGGAAGAGAAGGGCCCCTTTCTACGCGATGATATTATGGCTTTGTGTGATCTGCATACCCTACTTGAAGCAAAAGAAGCGGAAAAGCCAGCTGAACCTGAACCTCTTGCTGCAGAGCCTCCAGCAGAGCCTTCCAATGGTAGACCTGTTGCTAAAAAAGATGTCAAGCCCAAGTGGTTGAGAATGTAG___TCTTGCGTGTAATTGATTAGGATTTGTTAAATTAACTAGCAAAGTATGAATTACGCCTTTCTGCTAAAGCTGCAAGGCTTGTATTTACGTTGATGCTCACTGTAATGCAGGGTTGACTAAATATCTTAGAAAATGCTGAATGCACTGCCTTGCTCTAAGCTGTGTTTGTATACAGTATTGCATGCAATGATTTAGGCAGAATTCTGTAGACTTCATAATTGTGTGAAGTAGGATAGACCTCATAATTGTGTGAAGTAGGATTTTCCTGTTTATAGTTTATTGTTATATTAGGAACATAC

Fln Alignment:

Contig4564___SANFVPGALVRFHYDVPEEEEKGPFLRDDIMALCDLHTXXXXXXXXXXXXXXXXXXXXXXXXSNGRPVAKKDVKPKWLRM
A9NWT9_________________SANLVPGALVRFHYDVPEEEEKGPFLRDDIMALRDLHSLLEAKEAEKPAESEPLAAEPPPEPSNNRPVAKKDVKPKWLRM

SNPs (tot: 4)

Position	A %	G %	T %	Probability
80	83	16		0.994512
172	85	14		0.993533
223	90	10		0.90298
458	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain