SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4523

Length: 1044 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4523

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17392	16/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LEA_2 domain containing protein	-	-	2.0e-08	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	protein	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE45

Fln msg: W1: There is no M at the beginning,

Fln protein: SVPWGLGIWSRGRKSRKAGPRGGHRCDGNERRKETGEASAERRWRQRRTELLRRRKKRRIICCGSTVALLLLLVIVFVILAFTVFKARDPKVTVNSVALDHFEFNFDASRMKLDFNVSLDLNLSIKNPNKASFKFGNSTTELLYRGTNIGEAKVPADKIGSDSTITMNVTVTVLADRLLSNGNAVSDALAGSFPLSTWTRIAGRVNFLNIYKHHAVSYSSCNITIAVPAGTLTSQNCTHSIKL*

Protein Length: 245

Fln nts: ATGGGGATTGAACTCTTAAACCCAAATCGACCCACCCATGCCCTACAATGCTGTATATATACTGTATATCTTCACTAGATGGGGTGTGCTCTGTGTGTGTATATATATTTTGGGTGTTTCGATATAATTGGCTATCTATGATCAGATTCTGACACTAGGGGTGATTTTGCAGATCATTTGACAGCAGGATTCGATCCGCCGACCTCATAGTCGGTACCCTGGGGTTTGGGTATCTGGAGCAGAGGCCGAAAGAGTCGCAAAGCAGGGCCAAGAGGAGGGCACCGTTGCGATGGAAATGAAAGAAGAAAGGAAACGGGAGAAGCTTCCGCTGAGCGTCGATGGCGACAGAGGCGAACTGAGCTCCTCCGTCGTCGCAAGAAGCGCCGGATAATCTGTTGCGGTAGCACCGTTGCTCTTCTGCTTCTTTTAGTCATCGTGTTCGTGATTCTGGCGTTCACCGTGTTCAAGGCACGGGACCCCAAGGTGACCGTGAATTCCGTGGCCCTCGACCACTTTGAATTCAATTTCGATGCCTCGAGGATGAAGCTCGACTTCAATGTTAGCCTCGATCTGAATCTGTCTATCAAGAATCCCAACAAGGCGAGCTTCAAATTTGGAAACAGTACCACGGAGTTGCTGTATCGCGGCACAAACATCGGGGAAGCGAAGGTTCCGGCGGACAAAATAGGCAGCGACAGCACCATCACAATGAACGTTACTGTTACGGTTCTCGCGGACCGGCTGCTATCGAACGGAAATGCAGTTTCTGACGCGCTCGCTGGAAGTTTTCCGTTGAGTACTTGGACGAGGATTGCAGGGCGAGTGAATTTCCTCAACATTTATAAGCACCACGCGGTTTCCTACTCTTCCTGCAACATTACCATTGCTGTGCCAGCGGGTACCCTAACAAGCCAAAATTGTACACATTCTATCAAGCTCTAA___TAGGTATCTTGCAGGGATTTTTTTTCACAATCTATGTATTTATTCCCAAAATTTCTCCCTTAGTTTGCAGTATAACCTGTAATTTACTTAGGAATTGGGCGT

Fln Alignment:

Contig4523___IICCGSXXXXXXXXXXXXXXXXXXXFKARDPKVTVNSVALDHFEFNFDASRMKLDFNVSLDLNLSIKNPNKASFKFGNSTTELLYRGTNIGEAKVPADKIGSDSTITMNVTVTVLADRLLSNGNAVSDALAGSFPLSTWTRIAGRVNFLNIYKHHAVSYSSCNITIAVPAGTLTSQNCTHSIKL
D5AE45_________________LCCCGSTVALLLLIVIVCVILGVTVLKQRDPRITVNSVSLDHFEFKFDTTLFKLDLNVSLDLDLSIKNPNKASFKFGSSTTQLYYRGTNVGEAELPADEIGSDSTLRMNTTVTILADRLLTNSNAINDAMDGSFPLSSSTRISGRVNVLNIYKHHAVSFSYCNFTIAVPEGSLGSQECTHTIKL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
106	66		33		0.997452
177	33			66	1.0
180		33		66	1.0
211		33	66		1.0
216		33		66	1.0
217	33	66			1.0
219		33		66	1.0
235		33		66	1.0
277	33		66		1.0
357	40		40		1.0
476	16		83		0.994512
502		20		80	0.995493
533		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain