SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4372

Length: 457 nt

UniGene Fasta

>biog2_v2.0_unigene4372
CACAACATTGCTTAAGAACACACAAGAAGTTTTCAGAGGTTCAATGTGTGAAGAGTGCAAATGTTCCCTTGATGCGGTTTAAATTCAGTGGGATTTCAATTGATCTCTTATATGCAAGGCTTTCTCTGAGAACAATTCCAGAAGATATGGATATTCTCGATGAAAAATTGCTTGAGAATATTGATGATACAACTGTCAAAAGTTTGAATGGATGCAGAGTTACCGCACGGATCCTTCAGCTAGTACCCAAGATTGAGAACTTCCGTTCCACCCTGAGATGCATCAAGTTTTGGGCAAAGAGGAGAGGAATATATTCACATACTTTCGGGTTTCTTGGAGGAATACACTGGGCTGTGCTTGTTGCACGTGTTTGCCAAATGTTTCCAAATGCCACCGTCAGTATGCTGGTTTCAAGATTTTTTGGATATATGCACATTGGCAGTGGCCAACTCCAGTG

Ace file of the UniGene biog2_v2.0_unigene4372

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8369	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	poly polymerase	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	65%
Blast2go	RNA binding	GO:0003723	Molecular Function	65%
Blast2go	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF599	IPR006747	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A854

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 151 - 554

Fln protein: QHCLRTHKKFSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENIDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHTFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFFGYMHIGSGQLQ

Protein Length: 152

Fln nts: CACAACATTGCTTAAGAACACACAAGAAGTTTTCAGAGGTTCAATGTGTGAAGAGTGCAAATGTTCCCTTGATGCGGTTTAAATTCAGTGGGATTTCAATTGATCTCTTATATGCAAGGCTTTCTCTGAGAACAATTCCAGAAGATATGGATATTCTCGATGAAAAATTGCTTGAGAATATTGATGATACAACTGTCAAAAGTTTGAATGGATGCAGAGTTACCGCACGGATCCTTCAGCTAGTACCCAAGATTGAGAACTTCCGTTCCACCCTGAGATGCATCAAGTTTTGGGCAAAGAGGAGAGGAATATATTCACATACTTTCGGGTTTCTTGGAGGAATACACTGGGCTGTGCTTGTTGCACGTGTTTGCCAAATGTTTCCAAATGCCACCGTCAGTATGCTGGTTTCAAGATTTTTTGGATATATGCACATTGGCAGTGGCCAACTCCAGTG

Fln Alignment:

Contig4372___LRTHKKFSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENIDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHTFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFF
D5A854_________________LKKTAEVSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENLDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHIFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
58	33	66			0.997452
59	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain