SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4354

Length: 1162 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4354

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17818	41/41

Source	Descriptions	Term	Type	Identity
AutoFact	NADPH-dependent mannose 6-phosphate reductase [Phelipanche ramosa]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nadp-dependent d-sorbitol-6-phosphate dehydrogenase	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A951

Fln msg: your sequence is longer than subject: 349 - 314

Fln protein: MSGAAAAITLNNGHKMPIIGLGVWRMEGQEVRDLIFNALHIGYRHFDCAADYRNEKEVGQALAEAFQQGLVKREDIFITTKLWNSDHGHVLEACKDSLKNLQLEYLDLYLVHFPIATRHTGVGTTDSALDEDGVLDIDTTVSLEETWHAMEDLVSAGLVRSIGISNYDIFLTRDTLAYSKIKPSVNQIETHPYFQRESLVKFCQKHKIAVTAHTPLGGAAANTEWFGSVSCLEDPCLQNLAKKYKKTAAQIALRWGIQRNTIVIPKSSKVERLKENIEVFDFELSKEDMEAIKCIDRRLRTNNPEKFWGIHLLIKMVLRWELHNISKTWVLLFMSKYLNRGYESLEIL*

Protein Length: 350

Fln nts: ATGGGGATAGTCCGGAACTTTACTGCTAGCTTCCCACTGTCCTACTCTACTCAGGAATAGGAACAGGACCCTCTTTTGTTGGGCACACTTGCATCTTTGTCTTTGTTCCAGCA_-_ATGTCAGGAGCAGCTGCTGCGATTACACTGAATAATGGCCACAAAATGCCCATCATTGGGCTTGGAGTGTGGAGAATGGAGGGTCAGGAAGTAAGGGACCTTATCTTCAATGCACTACACATAGGGTACCGTCATTTCGATTGTGCAGCTGATTACAGGAATGAAAAGGAAGTTGGTCAAGCACTTGCGGAGGCCTTTCAGCAAGGCTTGGTGAAACGAGAGGATATTTTTATTACTACCAAGCTATGGAATTCAGACCATGGACATGTTCTCGAGGCATGCAAGGACAGTTTAAAGAATCTGCAGTTGGAATATTTGGACCTGTACTTGGTTCATTTTCCAATAGCCACACGACATACAGGTGTTGGAACAACTGATAGTGCCTTAGACGAAGATGGTGTTCTGGACATAGACACCACAGTTTCACTGGAGGAGACATGGCATGCCATGGAGGATTTGGTTTCTGCAGGCTTGGTCCGAAGCATTGGGATCAGCAATTATGACATTTTTTTAACTCGAGATACCCTGGCTTACTCAAAAATAAAGCCTTCTGTCAATCAGATTGAGACGCATCCCTACTTCCAGAGAGAGTCACTAGTGAAGTTCTGTCAGAAGCACAAAATTGCAGTCACTGCTCATACACCCCTTGGAGGTGCTGCAGCCAATACAGAATGGTTTGGTTCTGTGTCTTGTTTGGAAGATCCATGTCTTCAGAATTTAGCCAAGAAATACAAGAAAACTGCAGCACAAATTGCACTGAGGTGGGGCATTCAAAGGAATACAATTGTAATCCCCAAGTCCAGCAAAGTAGAACGTTTGAAGGAGAATATTGAAGTTTTTGATTTTGAGCTTTCAAAGGAGGACATGGAAGCAATCAAGTGCATAGATCGCAGATTACGCACCAATAACCCAGAAAAGTTTTGGGGAATTCATCTTTTGATTAAAATGGTCTTAAGATGGGAATTGCATAATATAAGCAAAACCTGGGTTCTCCTGTTCATGTCTAAATACTTGAACAGAGGATATGAATCTCTGGAAATACTTTGA___AA

Fln Alignment:

Contig4354___MSGAAAAITLNNGHKMPIIGLGVWRMEGQEVRDLIFNALHIGYRHFDCAADYRNEKEVGQALAEAFQQGLVKREDIFITTKLWNSDHGHVLEACKDSLKNLQLEYLDLYLVHFPIATRHTGVGTTDSALDEDGVLDIDTTVSLEETWHAMEDLVSAGLVRSIGISNYDIFLTRDTLAYSKIKPSVNQIETHPYFQRESLVKFCQKHKIAVTAHTPLGGAAANTEWFGSVSCLEDPCLQNLAKKYKKTAAQIALRWGIQRNTIVIPKSSKVERLKENIEVFDFELSKEDMEAIKCIDRRLRTNNPEKFWGIHL
D5A951_________________MSGAGSAITLNNGQKMPIIGLGVWRMEGHKIRDLIFNALHMGYRHFDCAADYRNEKEVGQALAEAFQQGLVKREDIFITTKLWNSDHGHVLEACKDSLKNLQLEYLDLYLVHFPIATRHAGVGTTDSALDEDGVLDIDTTVSLEGTWHAMEDLVSAGLVRSIGISNYDIFLTRDSLAYSKIKPAVNQIETHPYFQRESLVKFCQKHKIAVTAHTPLGGAAANIEWFGSVSCLEDPCLQSLAKKYKKTAAQIALRWGIQRNLIVIPKSSKVERLKENIDVFDFELSKEDMEAIKCIDRKLRTNNPEKFWGIHL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
270	75		25		0.996473
660	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain