SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4335

Length: 1095 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4335

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15733	75/81
SustainPine v2.0	sp_v2.0_unigene62389	6/81

Source	Descriptions	Term	Type	Identity
AutoFact	putative endomembrane protein 70 [Arabidopsis thaliana] gb\|AAD20090.1\| putative endosomal protein [Arabidopsis thaliana] gb\|AAL24256.1\| At2g01970/F14H20.4 [Arabidopsis thaliana] dbj\|BAE98629.1\| putative endosomal protein [Arabidopsis thaliana] gb\|AEC05528	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	transmembrane 9 superfamily protein member 1 precursor	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Photosystem II PsbP, oxygen evolving complex	IPR002683	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-
Sma3	Ribosomal protein L13, bacterial-type	IPR005823	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-
Sma3	Mog1/PsbP, alpha/beta/alpha sandwich	IPR016123	-	-
Sma3		IPR017909	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP13

Fln msg:

Fln protein: MASATPAIVLRTPSFSSRGSSFNGTALPAAYVKSSSLIPSKNSVSCSALKPADTEIIRTLATRRQLALTLLAGAAALTSKVSPADAAYGEAANVFGAPKKNTDFITYSGEGFTLQIPSKWNPSKEKEYPGQVLRYEDNSDAVSNVSVMVIPTDKKSIKDFGPPEEFISQVDFLLGKQAYSGKTQSEGGFDPDAVAIASLLEASTSVSNGKEYYNISVLTRTADGDEGGKHQLITATVKDGKLYMCKAQAGDKRWFKGARKYVESTASSFNVA*

Protein Length: 274

Fln nts: ATGGGGACTTCACACCAAACGATAACCAGAGCAGAGCAGAGCAAAGCGAAGGAAGGAAGGAA_-_ATGGCTTCTGCTACACCAGCGATTGTGCTCCGCACTCCCTCATTCTCCTCCCGCGGGAGTTCCTTCAACGGGACAGCTCTACCCGCCGCATACGTCAAGTCTTCGTCCCTCATTCCTTCCAAGAATTCCGTCTCTTGCAGTGCTCTCAAGCCGGCCGACACAGAAATCATAAGGACTCTCGCAACGCGCAGGCAGCTCGCTCTCACGCTGCTCGCTGGAGCAGCAGCCCTCACCAGCAAGGTCTCTCCCGCAGACGCAGCCTACGGCGAAGCTGCGAACGTGTTCGGAGCCCCGAAGAAGAACACCGATTTCATCACCTACAGTGGCGAGGGATTCACCCTACAAATCCCGTCAAAATGGAACCCCAGCAAAGAGAAAGAGTACCCTGGACAGGTACTCAGATACGAGGACAACTCAGACGCAGTCAGCAACGTCTCTGTCATGGTCATTCCCACCGACAAGAAGTCCATCAAGGATTTCGGTCCTCCCGAGGAATTCATTTCACAGGTGGATTTCTTGTTGGGCAAACAGGCATACTCTGGAAAGACACAGTCAGAGGGAGGATTCGATCCTGATGCAGTGGCAATTGCATCCTTACTAGAGGCATCAACCTCTGTTAGCAATGGGAAGGAATATTACAACATTTCTGTATTAACAAGAACAGCCGACGGTGACGAAGGAGGGAAACACCAGTTGATCACTGCAACTGTTAAAGATGGAAAGTTGTACATGTGTAAGGCTCAGGCTGGTGACAAGAGATGGTTTAAAGGAGCAAGGAAATATGTAGAAAGCACTGCTAGCTCCTTCAATGTTGCTTAA___ATTCCAAGCTTAAAACAATTTTAAGATATGTATGTACTATGTATATGATCATAGCTTTCTTGATGTCTATTTTCCGATGAAATATTTCAATCTTATATTCGGGGTTTTGTAGCTTTGTCGGAAATAGAACAGTATGAAGAGGATTTTTAATTTCGTATCCTTTATGCATTTTGTATTGAACTGCAGTCTGATAATCAAGAAACACTCTCATTAT

Fln Alignment:

Contig4335___MASATPAIVLRTPSFSSRGSSFNGTALPAAYVKSSSLIPSKNSVSCSALKPADTEIIXXXXXXXXXXXXXXXXXXXXXSKVSPADAAYGEAANVFGAPKKNTDFITYSGEGFTLQIPSKWNPSKEKEYPGQVLRYEDNSDAVSNVSVMVIPTDKKSIKDFGPPEEFISQVDFLLGKQAYSGKTQSEGGFDPDAVAIASLLEASTSVSNGKEYYNISVLTRTADGDEGGKHQLITATVKDGKLYMCKAQAGDKRWFKGARKYVESTASSFNVA
A9NP13_________________MASATPAIVFRTPSLSSRRSSFNGSSLPAAYVKSASLTPSKNSISCRAVKQADAEIVTSPATRRQIALTLLAGAAALTSKVSPADAAYGEAANVFGAPKKNTDFITYSGKGFTIQIPSKWNPSKEVEYPGQVLRYEDNGDTVSNVSVMVIPTDKKSIKDFGPPQQFLSQVDFLLGKQAYSGKTQSEGGFDPDAVAVASLLEASSSVTNGKEYYNISVLTRTADGDEGGRHQLITATVSDGKLYVCKAQAGDKRWFKGARKFVESTASSFNVA

SNPs (tot: 3)

Position	C %	G %	T %	Probability
10		14	85	0.993533
11		14	85	0.993533
12	85	14		0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
27	43	CAGAG CAGAG CAGAG CA	17
48	62	GAAG GAAG GAAG GAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain