SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4322

Length: 243 nt

UniGene Fasta

>biog2_v2.0_unigene4322
CGTTTAGAGTTCAGAGCAGCCTGAATGGATAACTAAAATATCAGCGAAGCAAAGCAGGGTGCTTGAGGTTGAGTTGGATTGCGTTGCAGAGGAGAAACAAACAATGGCTTCTTCATCTGCTTCACTCTGTTCTCATATTTATGCTTCAAATTGCTTCCCTGCAAACCCTATTCATACAAATTACTGTAGCCGCACCTCTTTTCTGTATACAAAACGGTGTTCAGAACAAAAAAGTTCATTGAA

Ace file of the UniGene biog2_v2.0_unigene4322

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6466	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=D5A7Z0_PICSI	-	-	86%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	atp-dependent clp protease proteolytic subunit	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	86%
Blast2go	proteolysis	GO:0006508	Biological Process	86%
Blast2go	photosynthesis	GO:0015979	Biological Process	86%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	86%
Blast2go	chloroplastic endopeptidase Clp complex	GO:0009840	Cellular Component	86%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Ribosomal protein L9	IPR000244	-	-
Sma3	Peptidase S14, ClpP	IPR001907	-	-
Sma3	Trigger factor, C-terminal, bacterial	IPR008880	-	-
Sma3	Acute myeloid leukemia 1 (AML 1)/Runt	IPR013524	-	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Z0

Fln msg: Distance to subject end: 207 aas, your sequence is shorter than subject: 46 - 254

Fln protein: MASSSASLCSHIYASNCFPANPIHTNYCSRTSFLYTKRCSEQKSSL

Protein Length: 47

Fln nts: CGTTTAGAGTTCAGAGCAGCCTGAATGGATAACTAAAATATCAGCGAAGCAAAGCAGGGTGCTTGAGGTTGAGTTGGATTGCGTTGCAGAGGAGAAACAAACA_-_ATGGCTTCTTCATCTGCTTCACTCTGTTCTCATATTTATGCTTCAAATTGCTTCCCTGCAAACCCTATTCATACAAATTACTGTAGCCGCACCTCTTTTCTGTATACAAAACGGTGTTCAGAACAAAAAAGTTCATTGAA

Fln Alignment:

Contig4322___MASSSASLCSHIYASNCFPANPIHTNYCSRTSFLYTKRCSEQKSS
D5A7Z0_________________MASASASLCSYIYTSNCFPANPIYTNHCNPTPFLYTKRCSEQKYS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
146			25	75	0.996473
147			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain