SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4303

Length: 1032 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4303

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13909	37/37

Source	Descriptions	Term	Type	Identity
AutoFact	chaperonin 21 precursor [Solanum lycopersicum]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	chaperonin 20	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	83%
Blast2go	response to cold	GO:0009409	Biological Process	83%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	83%
Blast2go	copper ion binding	GO:0005507	Molecular Function	83%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	83%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	83%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	83%
Blast2go	apoplast	GO:0048046	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin 21, chloroplast	IPR017416	-	-
Sma3		IPR001476	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRZ6

Fln msg:

Fln protein: MAASQLGCAPTSRVGLLSFEGLSSSINASSSRAPCSVAIRQQPFRRNLVVKAATTVAPKFTTIKPLGDRVLVKIQAVEEKSRGGIILPDTTQDKPQGGEVVAVGEGKSFSQTQVEPSVQLGAKIIYSKYAGTELEFNGVDHLLLKEDDIVGLLETDDIKDLKPLNDRVLIKVTKAEEKTTGGILLTETAKEKPSTGTVIAVGPGMYDEEGNRKALNISPGNTVLYSKYAGNEFKSSDGSQYISMRASDVIAVMS*

Protein Length: 256

Fln nts: ATGGGGCATATTGAGGGTTTTGGGGATCTTCTGTTTGGTCCATCTCTGCATTTCTTTATTGGGTTTTCTCGTTTTCTTCATCTGATAAGTGCAGAATCTCATCTGCGCAGTGGTGAAAAACACTTTGGTTGTGTAAAATCTGGAATAGGACGCCAAATCTGAGTTGGGTTTTGTAAGTTTTGGCAAAAGATATA_-_ATGGCGGCATCGCAGCTGGGTTGTGCGCCCACCTCGCGTGTAGGATTATTGTCGTTTGAAGGCTTAAGTTCTTCCATCAATGCCTCTTCCTCCAGAGCTCCTTGCAGCGTCGCTATTCGCCAACAACCATTCAGAAGAAATTTGGTTGTTAAAGCGGCCACAACTGTGGCTCCAAAGTTCACAACAATCAAGCCACTAGGTGATAGAGTGCTCGTAAAGATTCAGGCCGTTGAAGAGAAAAGTCGAGGTGGAATTATATTGCCTGATACTACCCAAGACAAGCCCCAGGGTGGTGAGGTCGTAGCTGTGGGCGAGGGAAAAAGTTTTAGCCAAACTCAGGTTGAACCCAGCGTTCAGCTTGGAGCCAAAATTATTTATTCGAAGTATGCAGGTACAGAGCTCGAGTTCAATGGAGTTGATCATCTTCTTCTTAAAGAGGATGACATTGTTGGCCTTCTTGAGACGGATGACATAAAGGACCTCAAGCCATTGAATGACCGTGTTCTGATCAAGGTAACAAAAGCCGAGGAAAAAACAACTGGAGGTATACTGTTGACAGAGACTGCTAAGGAAAAACCTTCCACTGGAACGGTGATTGCTGTAGGACCAGGTATGTATGATGAAGAAGGAAACAGGAAGGCACTTAACATTTCTCCGGGAAACACTGTGCTGTACTCAAAATATGCAGGCAATGAATTCAAAAGTAGCGATGGATCTCAGTATATCTCAATGAGGGCGTCTGATGTGATTGCTGTGATGTCTTGA___ATCTGTTTGGTTTGTTTACCTGCTGCCAAGGAGTGAAATTGCTGCTCCATTTGATTGTTACATGGAATCTGAA

Fln Alignment:

Contig4303___MAASQLGCAPTSRVGLLSFEGLXXXXXXXXXXXXXXVAIRQQPFRRNLVVKAATTVAPKFTTIKPLGDRVLVKIQAVEEKSRGGIILPDTTQDKPQGGEVVAVGEGKSFSQTQVEPSVQLGAKIIYSKYAGTELEFNGVDHLLLKEDDIVGLLETDDIKDLKPLNDRVLIKVTKAEEKTTGGILLTETAKEKPSTGTVIAVGPGMYDEEGNRKALNISPGNTVLYSKYAGNEFKSSDGSQYISMRASDVIAVMS
A9NRZ6_________________MATSQLGCASTTRVGLLSFEGLRSSINASSSRAPCSVAIRHQPFRRNLVVKAATTVAPKFTTIKPLGDRVLVKIQAIEEKSRGGILLPDTTQDKPQGGEVVAVGEGKSFSKTQVEPSVQLGAKIIYSKYAGTELEFNGVDHLLLKEDDIVGLLETDDIKDLKPLNDRVLIQVSKAEEKTTGGILLTETAKEKPSTGTVIAVGPGMYDEEGNRKPINISPGKTVLYSKYAGNEFKSSDGSQYVSMRVSDVIAVMS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
381	85		14		0.993533
623			11	88	0.923564
625		11		88	0.923564
708	87		12		0.992554
940	84		15		0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain