SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4282

Length: 1188 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4282 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15345	29/38
SustainPine v2.0	sp_v2.0_unigene16529	9/38

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HVA22-like protein c , putative [Solanum demissum] gb\|ABO93002.1\| putative HVA22 protein [Solanum tuberosum]	-	-	9.99967e-42	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	hva22-like protein	-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	77%
Blast2go	response to water deprivation	GO:0009414	Biological Process	77%
Blast2go	response to cold	GO:0009409	Biological Process	77%
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTJ7

Fln msg:

Fln protein: MGWGSFLKTVLYNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYVKLIATCWLVLPVFNGAAYVYENFVRQMLLNPNARFTPGQRIMNALSPSTKNSVERFVHQYGPDALDRAMKRAEKEAKINRNGGYDDDEY*

Protein Length: 167

Fln nts: ATGGGGATAATCGTCAAATTGATGGGAAAGTAGTTATGGAGAAGGCATCTGCATCTCACACTTTTTCACACGCGTGATGTTTGGTATTTGTTTTTGTTAAAGTAAATTGTTAAAGTGATATTAAGCAGAGATTCATTACATTTTGCTTTACAGTGTGGCCACTCAAGAACCATTGGGTTCGATTCTTTTGAAAAAGTGGGTGCATTAAATACTTGCATGTCCCCTCATCTCTGTGTGACGGTGGACTCTGTAATCTAGAGTACACAGAGAAGGGAGCCAAAAGAGAGAATAGTATTTGGTGTCAACAGAGCAGAGAACCAGAAGAGAGAAGGATTTTGGGGTAACAGAAAAGAAAACTATAAGAGAGGCTAGGATTTGGTGGAAACAGAGAAGAAAACCTGAGAACCAGAAGAGAGAAGGATTTGGGGTATCAGGAAAGAACCATAAGAGAGGCTAGGATTTGCGGAAACAGAGAAGAAAACCTGAAGTGAAGAATTTGGTGGAAGTTCTTTGCAGAAAGCC_-_ATGGGTTGGGGGAGTTTTCTTAAAACAGTTTTGTATAATATTGACATATTTGCAGGGCCTGTGGTGACTTTACTTTATCCTCTATATTCCTCCATTAGAGCTATAGAGAGTCCATCTCGGCTGGATGATCAGCAGTGGCTGACGTACTGGGTTCTATACTCGTTCATTACACTGTTTGAGCTTTCCTTCTCTCGGCTGCTAGAATGGTTGCCATTCTGGCCTTATGTCAAACTGATAGCCACCTGCTGGCTGGTGCTGCCAGTGTTCAATGGGGCAGCTTATGTGTATGAGAACTTTGTCAGGCAGATGCTTCTGAACCCCAATGCAAGGTTTACCCCTGGTCAGAGGATCATGAACGCGTTAAGCCCTAGTACCAAAAATTCTGTAGAACGCTTTGTTCACCAATATGGACCCGATGCACTTGATAGAGCCATGAAAAGGGCAGAAAAGGAAGCAAAAATAAATAGAAATGGTGGATATGATGATGACGAGTACTGA___CTTCATCCTATGCCCATTTGGATCAGATACTGTGTGACTTACATGACACTCAAATTCTGTTTGTAGATCTGTCTGCTGAGAGATGTAGTAGGCAAATTTCTCTGGTGACTGTTCCTGAATACAGAGAGTTTGTTTTATTAGTATAGGGGTACATGCTTTTGTAATTAT

Fln Alignment:

Contig4282___MGWGSFLKTVLYNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYVKLIATCWLVLPVFNGAAYVYENFVRQML-----LNPNARFTPGQRIMNALSPSTKNSVERFVHQYGPDALDRAMKRAEKEAKINRNGGYDDD
C0PTJ7_________________MGWGNFLKAVLSNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELTFSRMLQWLPFWPYVKLIATCWLVLPVFNGAAYVYENFVRTYLLNSSVLNSSARSSPGQRILNAISPSTKNSVERFVNQYGPDALDRAIKRAEKEAKVNRNTGYDDE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
231	25			75	0.996473
274	75	25			0.996473
275	75	25			0.996473
277			80	20	0.995493
365		10		90	0.90298
588	16		83		0.994512
601	25			75	0.996473
635		25		75	0.996473
698		50		50	1.0
845		20		80	0.995493
847		20		80	0.995493
848		20	80		0.995493
849	20			80	0.995493
959	71	28			1.0
961	57	42			1.0
962		42	57		1.0
963	85	14			0.993533
964		14	57	28	1.0
1045	40	60			1.0
1046	40	60			1.0
1047	20	60	20		0.99255
1051	40			60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain