SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4176

Length: 1794 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4176

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7864	59/84
SustainPine v2.0	sp_v2.0_unigene31473	24/84

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	cell division cycle protein 48 homolog	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	cell cycle	GO:0007049	Biological Process	96%
Blast2go	cell division	GO:0051301	Biological Process	96%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	CDC48, domain 2	IPR004201	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVV9

Fln msg: your sequence is longer than subject: 533 - 416

Fln protein: LINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKYAIRENIEQDIERERKRKENPEAMDEDDSEEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADRPGTAAAGSSEPAENKEDDDLYS*

Protein Length: 534

Fln nts: TTAATCAATGGGCCCGAAATTATGTCGAAGTTGGCTGGAGAAAGTGAAAGCAATCTGAGGAAAGCCTTCGAGGAGGCAGAGAAGAATGCCCCATCCATTATTTTTATTGATGAAATTGATTCAATAGCACCCAAAAGAGAAAAGACACATGGTGAGGTTGAGAGGCGAATTGTTTCTCAACTTCTGACACTGATGGATGGGCTAAAAGCTCGAGCCCATGTTATTGTGATAGGAGCAACTAACCGGCCAAATAGTATTGACCCAGCTCTTAGAAGGTTTGGAAGGTTTGACAGGGAAATTGATATTGGGGTTCCTGATGAAGTGGGGCGGCTGGAAGTCCTTCGTATACATACAAAGAATATGAAGCTTTCGGACGATGTTGATCTTGAACGAATTGCAAAGGACACACATGGATATGTTGGAGCTGATCTTGCAGCTCTTTGCACCGAGGCTGCGCTACAGTGCATCAGGGAAAAAATGGATGTTATAGACTTGGAAGATGAGACCATCGATGCTGAAATCCTCAATTCTATGGCTGTTACAAATGAGCACTTCCAGACTGCGTTGGGCACCAGTAACCCATCTGCCTTGCGTGAAACTGTTGTTGAAGTGCCCAATGTTTCTTGGGATGATATTGGTGGTTTGGAAAATGTCAAGAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAGAAATTTGAAAAGTTTGGCATGTCTCCTTCCAAAGGAGTGCTCTTTTACGGGCCACCAGGTTGTGGTAAGACGCTGCTTGCAAAAGCTATTGCAAATGAGTGCCAGGCCAATTTTATCAGTGTAAAAGGCCCAGAATTATTAACTATGTGGTTTGGAGAAAGTGAGGCTAATGTAAGAGAGATTTTCGACAAAGCCCGACAGTCAGCGCCTTGCGTCTTGTTTTTTGATGAGCTTGATTCTATTGCTACACAGCGAGGGAGCAGTGTTGGCGATGCAGGTGGTGCTGCGGACAGAGTCCTAAATCAGTTGTTAACAGAGATGGATGGGATGACAGCCAAGAAAACTGTTTTCATTATTGGGGCCACAAATAGGCCAGATATCATTGATCCTGCATTGCTAAGGCCTGGTAGGCTTGACCAGTTAATTTACATACCATTACCCGATGAGAGTTCACGCCTGCAAATTTTTAAAGCATGCCTGAGAAAGTCACCGGTTGCCAAGGATGTTGATTTGACTGCTTTAGCTCGTTATACCCAAGGATTCAGTGGAGCTGATATTACAGAAATTTGTCAGCGGGCTTGCAAATATGCCATTCGAGAAAACATCGAGCAGGATATTGAACGTGAAAGGAAGAGAAAAGAAAATCCTGAAGCTATGGATGAGGATGATAGTGAGGAGGTGTCTGAAATAAAAGCAGCTCATTTTGAGGAGAGCATGAAATATGCTCGAAGGAGTGTCAGCGATGCTGATATCCGAAAATATCAAGCATTTGCACAGACGCTGCAGCAGTCTCGAGGTTTTGGTACAGAATTCCGATTTGCAGACAGGCCAGGTACAGCGGCAGCTGGTTCTTCAGAACCAGCAGAAAATAAAGAAGACGATGACTTGTATAGTTGA___TAGGTCCCGTAGCATTAACACTGCCTGATTAGTAAAGTGGGATGTTTATCTTCTTTTGGGCAACTTAGCGTATTTCCTGATACATTGAAAAGAATTTATGGAGGTTGTTCTAGAGAAGACCTTGTTCACAAGGTAGTCGATGCTATGAAAATCTGCTTCTTCTTTAACGCGTAGATTAACTATTGTCTTAATATC

Fln Alignment:

Contig4176___INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE--------VERRIVSQLLTLMDGLKARAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPS
A9NVV9_________________LSGAELYSMYVGEGEALLRETFQRARLAAPSIIFFDEADAIAAKRNGREEENSSGNGAAVGERLLSTLLTEIDGLEITKGVLVLGATNRPEAIDAALMRPGRFDLVLYVPPPDLEGRIEVLRVHTRNMKLEINVDLPQIAKKTQLFTGAELAGLCREAAIVALRE-----DICADT----------VCSRHFELARNSLRPS

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
321	75		25		0.996473
400	80		20		0.995493
592	50		50		1.0
616		50		50	1.0
678	25			75	0.996473
680		75	25		0.996473
681	75		25		0.996473
682	75		25		0.996473
727		40		60	1.0
733		20	80		0.995493
760	40		60		1.0
775			80	20	0.995493
796	20		80		0.995493
877	33			66	0.997452
878	33	66			0.997452
907	66		33		0.997452
1016	66			33	0.997452
1017		66	33		0.997452
1182		75		25	0.996473
1210	20			80	0.995493
1213	80		20		0.995493
1214			20	80	0.995493
1320	20		80		0.995493
1334	25		75		0.996473
1409			14	78	0.999974
1416	64			35	1.0
1417		35	64		1.0
1424	78		21		1.0
1439		21		78	1.0
1457		84		15	0.999986
1460	25	75			1.0
1529		61	38		1.0
1531	38		61		1.0
1579		61		38	1.0
1589	80		6		0.999961
1645			45	54	1.0
1654		37	62		1.0
1662			28	71	1.0
1680	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain