SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4157

Length: 380 nt

UniGene Fasta

>biog2_v2.0_unigene4157
ATGGGGTCAGCAGATGCTCAGACCAAAGCAAACCAAAATGCTGGTTTATCCTGTTATAATACTGTCAGGTTGCATGTTGAAGTAATGCAGTTTAGCGCTCCCTTTTAATTGGATGGGGACTATGGACGCTGCTGTAGAGCAATTCTTGTCAGCTGCTAATGATGCTAAGCTACATGGAGAAATGTGCAGACAACTTGCTAGGCTTGTGATTAAAATGATGAAAATATTTCCTGCAATGGAAGCAGCACGTCCAAGGCGTAAGTCAGGTATTCAGGCATTATGTGCCTTTCATTTAGCACTTGAAAAGGCCAAATCACTTCTTCGACACTGTGCAGACTGCAGCAAACTGTACTTGGCAATTACAGGGGATGCACTATTGA

Ace file of the UniGene biog2_v2.0_unigene4157

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25517	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=U-box domain-containing protein 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	u-box domain-containing protein 7	-	-	1.80347e-30	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	1.80347e-30	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	1.80347e-30	84%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	1.80347e-30	84%
Blast2go	transmembrane receptor protein serine/threonine kinase binding	GO:0070696	Molecular Function	1.80347e-30	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.80347e-30	84%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9CAG5

Fln msg: Distance to subject end: 695 aas, your sequence is shorter than subject: 89 - 782

Fln protein: MGTMDAAVEQFLSAANDAKLHGEMCRQLARLVIKMMKIFPAMEAARPRRKSGIQALCAFHLALEKAKSLLRHCADCSKLYLAITGDALL

Protein Length: 90

Fln nts: ATGGGGTCAGCAGATGCTCAGACCAAAGCAAACCAAAATGCTGGTTTATCCTGTTATAATACTGTCAGGTTGCATGTTGAAGTAATGCAGTTTAGCGCTCCCTTTTAATTGG_-_ATGGGGACTATGGACGCTGCTGTAGAGCAATTCTTGTCAGCTGCTAATGATGCTAAGCTACATGGAGAAATGTGCAGACAACTTGCTAGGCTTGTGATTAAAATGATGAAAATATTTCCTGCAATGGAAGCAGCACGTCCAAGGCGTAAGTCAGGTATTCAGGCATTATGTGCCTTTCATTTAGCACTTGAAAAGGCCAAATCACTTCTTCGACACTGTGCAGACTGCAGCAAACTGTACTTGGCAATTACAGGGGATGCACTATTGA

Fln Alignment:

Contig4157___VEQFLSAANDAKLHGEMCRQLARLVIKMMKIFPAMEAARPRRKSGIQALCAFHLALEKAKSLLRHCADCSKLYLAITGDALL
Q9CAG5_________________LEENLFAASDAKLHGDMCKELSGVLCKVLSIFPSLEGARPRSKSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDAVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain