SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4072

Length: 1679 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4072 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16948	6/37
SustainPine v2.0	sp_v2.0_unigene27563	31/37

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=4 Tax=rosids RepID=A9PEC4_POPTR	-	-	72%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	3-ketoacyl- synthase	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	86%
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	86%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	86%
Blast2go	cuticle development	GO:0042335	Biological Process	86%
Blast2go	response to light stimulus	GO:0009416	Biological Process	86%
Blast2go	response to cold	GO:0009409	Biological Process	86%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	86%
Blast2go	fatty acid elongase activity	GO:0009922	Molecular Function	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVH1

Fln msg: Separated hits, possible frame ERROR between 1357 and 1393, and overlapping frame ERROR between 1644 and 1629, Distance to subject end: 26 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 477 - 530

Fln protein: MGEEEGSGNRGLPDFLLTVKLKYVKLGYQYLTKYFLSFLLVPLLVGVGLEVGRIGVDDVVLLWQALEFNLVHALSCTGLLVFVSTVYIMSRPRAVYLVDYSCYRPPDSCRVPFATFMEHSRLFKYFDQKSLDFQMKILERSGLSEETCLPPALHYIPPSPTMSASRDEAQLVIFSAMDDLFSKTGLKPKDIDILVVNCSLFCPTPSLSAMVINRYKMRGNTMSFNLSGMGCSAGVIAVDLANNLLQVHGNSNAIVVSTETITPNWYRGNQRSMLLPNCLFRMGGAAILLSNKRNERSRAKYRLVHAVRTHKGADDKAYRCVYQEEDAQGKVGMSLSKDLMAIAGDALKANITTLGPLVLPVSEQLLFLxxxxxxxxxxxxxKSYIPDFKQAFEHFCIHAGGRAVIDELEKNLQLSPEHVEPSRMALHRFGNTSSSSIWYELAYIEAKGRMRRGDRVWQxxxxxxxxCNSAVWKCLRT

Protein Length: 478

Fln nts: CTCAAGTTGTCTGGAGGAGGCGTATTTGATTGTGCTGCCTCCGTGAAGACCAGTTGGTTGAACAGTTTCTATCAGGGGATGTTCTTTTTTCTTCTATAAGAATGCAAGGTTGCTCAATGTCTAGTGCCAAGTTAGAGCGACTTTGATGCCAGGATTGATGAATTGGGTATCTGTATCTGCTTCTGGTTCTGCATTGTCTTAGTTGCAATTTAGTTTTGCTTCAGTTTTTGTATTTATTGTTGTTTGAGCA_-_ATGGGTGAAGAAGAAGGGTCTGGTAATCGTGGCCTGCCTGATTTTCTCCTCACTGTGAAGTTGAAATACGTGAAGCTTGGATACCAGTATCTGACTAAATATTTTCTATCTTTCCTGCTGGTTCCGTTGCTGGTTGGAGTGGGCTTGGAGGTTGGAAGAATTGGGGTGGACGATGTAGTTTTGCTATGGCAAGCTCTGGAGTTCAATCTTGTTCATGCATTGTCATGTACAGGGCTTCTGGTTTTTGTATCGACTGTGTATATAATGTCGAGGCCTCGTGCGGTGTATTTGGTGGACTATTCCTGTTACCGTCCCCCAGATTCATGCAGAGTTCCTTTTGCAACTTTCATGGAGCATTCCAGGCTGTTCAAGTATTTTGACCAGAAAAGCCTGGATTTTCAGATGAAGATTCTGGAAAGGTCTGGTCTTAGTGAAGAGACTTGCCTCCCCCCTGCTCTGCATTACATTCCCCCTAGTCCCACAATGTCGGCTTCCCGCGACGAGGCCCAGCTCGTCATATTTTCTGCCATGGACGATCTGTTCTCCAAAACGGGACTCAAGCCCAAGGACATTGATATTCTTGTTGTGAATTGCAGTCTTTTCTGCCCGACCCCGTCGCTTTCAGCCATGGTGATTAACAGATACAAAATGCGCGGGAACACCATGAGCTTTAATTTATCTGGCATGGGCTGCAGCGCGGGGGTCATAGCAGTGGATCTGGCGAACAATCTTCTGCAAGTCCATGGGAATTCGAATGCTATTGTGGTGAGCACCGAGACCATTACGCCGAATTGGTACCGCGGGAACCAGCGATCCATGCTGCTCCCAAATTGCTTGTTCCGAATGGGCGGCGCCGCCATTTTGTTATCCAACAAACGCAACGAACGGAGCCGCGCGAAGTACAGGCTCGTCCATGCGGTCAGAACTCACAAAGGCGCAGACGACAAGGCATACCGCTGCGTCTATCAAGAAGAGGACGCGCAGGGCAAAGTCGGGATGTCGCTCTCCAAAGATCTCATGGCGATCGCCGGCGACGCGCTCAAGGCCAACATAACGACACTCGGCCCCCTGGTTCTGCCGGTTTCCGAGCAGCTCCTCTTTCTTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAATCCTACATCCCCGACTTCAAGCAGGCCTTCGAACATTTCTGCATCCACGCCGGCGGGCGCGCCGTAATCGACGAGCTCGAAAAAAACCTGCAGCTCTCCCCCGAGCATGTCGAGCCCTCGCGCATGGCGCTTCACAGGTTCGGCAACACCTCTTCCTCGTCCATCTGGTACGAGCTCGCCTACATCGAGGCCAAGGGCAGGATGCGCCGAGGCGACCGCGTGTGGCAGATxxxxxxxxxxxxxxxxxxxxxATGTAACAGCGCCGTCTGGAAGTGTCTGCGCACT

Fln Alignment:

Contig4072___RGLPDFLLTVKLKYVKLGYQYLTKYFLS-FXXXXXXXXXXXXXXXXXVDDVVLLWQALEFNLVHALSCTGLLVFVSTVYIMSRPRAVYLVDYSCYRPPDSCRVPFATFMEHSRLFKYFDQKSLDFQMKILERSGLSEETCLPPALHYIPPSPTMSASRDEAQLVIFSAMDDLFSKTGLKPKDIDILVVNCSLFCPTPSLSAMVINRYKMRGNTMSFNLSGMGCSAGVIAVDLANNLLQVHGNSNAIVVSTETITPNWYRGNQRSMLLPNCLFRMGGAAILLSNKRNERSRAKYRLVHAVRTHKGADDKAYRCVYQEEDAQGKVGMSLSKDLMAIAGDALKANITTLGPLVLPVSEQLLFLSxxxxxxxxxxxxKSYIPDFKQAFEHFCIHAGGRAVIDELEKNLQLSPEHVEPSRMALHRFGNTSSSSIWYELAYIEAKGRMRRGDRVWQIAxxxxxQCNSAVWKCLRT
A9NVH1_________________RRLPDFLQSVNLKYVKLGYHYLISHAVYLFSVPVLLLAFSAEIGSLSQQDLWRLWEQPHFDLTTMLTFSGATVFMLCLYFMSQPRSVYLVDFACFKPSDELKVSKEEFISLAKKSGHFDDASLEFQKRILERSGVGDETYLPKAVMGPGLCSTMKEGRAEAEMVMFGALDELFEKCKVRPKDVGILVVNCSLFNPTPSLSAMIINHYKMRGNILSFNLGGMGCSAGIISLDLARDMLQAHPNSYAIVVSTEMITFNWYTGAERSMLMPNCFFRMGGAAILLSNKRRDRRRAKYSLSHIVRTHKGADDRSFRCVYQQEDDKRKKGLSVSKDLLEIGGHALKANITTLGPLVLPLSEQLLFLAxxxxxxxxxxxxKPYIPDFKLAFEHFCIHAGGKTILDELQNNLGLTNKHMEPSRMTLHRFGNTSSSSLWYELAYMEAKHQIKKGDRVWQIAxxxxxKCNSAVWKTLRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain