SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4055

Length: 558 nt

UniGene Fasta

>biog2_v2.0_unigene4055
AGGATGCCTGCCTTACATTCTGGACAGGCTTCCTCACACCACATCTCAGATGGACAAGAATGGGNGTGCCACTCCTTACAATGAAGTTGCTGGGGACTACAACAAATTACTCAAGGAAGCCGTCATACAGCTGAGGACAGATCTTCCAATGGCAGCAATAACCTATGTTGACATGTATTCAATCAAATATGGTCTAATAACAAATGCCACCAAGGAAGGTTTTAAGTATCCTCTGAGAACATGCTGTGGATTTGGAGGTTTGTACAATTACAACAGGCATGTGGGCTGTGGATCCAAGGTTACATTGAATGGAACCCAAGTGGAAGGAAAATCTTGCAAGGACCCATCTGTTTATGTTAATTGGGATGGAGTCCATTTCACACAGGCTTCTAATCACATATTCTCTGGCCATGTCATATCTGGAGAGTTCTCTGATCCACCTCTTCCTATATCTCAAGTCTGTCACAGATCTTCAACTAGGTGACAGTCTTTATGCCTCTTTCGTAGTTCATCAAAGAGGTCAATCCAATCAAACATTGGCAGTGATGTATGAATCAC

Ace file of the UniGene biog2_v2.0_unigene4055

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6092	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-L-fucosidase 3 [Arabidopsis thaliana] sp\|Q9FXE5.1\|FUCO3_ARATH RecName: Full=Alpha-L-fucosidase 3; AltName: Full=Alpha-1,2-fucosidase; Short=AtFXG1; AltName: Full=Alpha-L-fucoside fucohydrolase 3; Flags: Precursor gb\|AAG28886.1\|AC008113_2 F12A21.4 [A	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	gdsl esterase lipase	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	76%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3		IPR015706	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX36

Fln msg: your sequence is shorter than subject: 161 - 230

Fln protein: GCLPYILDRLPHTTSQMDKNGSATPYNEVAGDYNKLLKEAVIQLRTDLPMAAITYVDMYSIKYGLITNATKEGFKYPLRTCCGFGGLYNYNRHVGCGSKVTLNGTQVEGKSCKDPSVYVNWDGVHFTQASNHIFSGHVISGEFSDPPLPISQVCHRSSTR*

Protein Length: 162

Fln nts: AGGATGCCTGCCTTACATTCTGGACAGGCTTCCTCACACCACATCTCAGATGGACAAGAATGGGaGTGCCACTCCTTACAATGAAGTTGCTGGGGACTACAACAAATTACTCAAGGAAGCCGTCATACAGCTGAGGACAGATCTTCCAATGGCAGCAATAACCTATGTTGACATGTATTCAATCAAATATGGTCTAATAACAAATGCCACCAAGGAAGGTTTTAAGTATCCTCTGAGAACATGCTGTGGATTTGGAGGTTTGTACAATTACAACAGGCATGTGGGCTGTGGATCCAAGGTTACATTGAATGGAACCCAAGTGGAAGGAAAATCTTGCAAGGACCCATCTGTTTATGTTAATTGGGATGGAGTCCATTTCACACAGGCTTCTAATCACATATTCTCTGGCCATGTCATATCTGGAGAGTTCTCTGATCCACCTCTTCCTATATCTCAAGTCTGTCACAGATCTTCAACTAGGTGA___CAGTCTTTATGCCTCTTTCGTAGTTCATCAAAGAGGTCAATCCAATCAAACATTGGCAGTGATGTATGAATCAC

Fln Alignment:

Contig4055___GCLPYILDRLPHTTSQMDKNGSATPYNEVAGDYNKLLKEAVIQLRTDLPMAAITYVDMYSIKYGLITNATKEGFKYPLRTCCGFGGLYNYNRHVGCGSKVTLNGTQVEGKSCKDPSVYVNWDGVHFTQASNHIFSGHVISGEFSDPPLPISQVC
A9NX36_________________GCFPSFLTELPHSQSDLDSYGCMISYNTAVVDYNNLLREKLEEVRKVLPDASVIYVDSHAIKLEIFTNPTKHGFKYGTKACCGSGGDYNFSPQLFCSQRKELNGTVVTASVCSDPSSYVSWDGIHNTDAANNYITNEILSGKYFQPPFPLSTLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain