SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4052

Length: 1310 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4052

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18916	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase SRK2E n=6 Tax=rosids RepID=SRK2E_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein kinase-like protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	90%
Blast2go	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	90%
Blast2go	response to water deprivation	GO:0009414	Biological Process	90%
Blast2go	growth	GO:0040007	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	phosphorylation	GO:0016310	Biological Process	90%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	90%
Blast2go	triglyceride biosynthetic process	GO:0019432	Biological Process	90%
Blast2go	regulation of anion channel activity	GO:0010359	Biological Process	90%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	90%
Blast2go	leaf development	GO:0048366	Biological Process	90%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	90%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	90%
Blast2go	protein phosphatase binding	GO:0019903	Molecular Function	90%
Blast2go	cytosol	GO:0005829	Cellular Component	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%
Blast2go	regulation of reactive oxygen species metabolic process	GO:2000377	Biological Process	90%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Orotidine 5'-phosphate decarboxylase domain	IPR001754	-	-
Sma3	Kinase-associated KA1	IPR001772	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Orotate phosphoribosyl transferase, clade 1	IPR004467	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Orotidine 5'-phosphate decarboxylase	IPR014732	-	-
Sma3		IPR015740	-	-
Sma3		IPR015741	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Orotidine 5'-phosphate decarboxylase, active site	IPR018089	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACL3

Fln msg:

Fln protein: MDGAPFAEGSSTFPSAMDIMPIMHDSDRYELVKDIGSGNFGVARLMRDRQTRELVAVKYIERGENIDENVKREIINHRSLRHPNIIQFKEVILTPTHLAIVMEYAAGGELYERICNAGRFREDEARFFFQQLISGVSYFHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPNSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIGRIMSAQYCIPDHITSECRHLLSRIFVANPVMRITMTEIQNHEWFLKNLPADLLDAHTSNQYDCADQPAQSTAEIMRIIDEAKIPALGSGLEQYFGDGLDSDDMDLDDDADLDDDSSGESVYAM*

Protein Length: 364

Fln nts: TTTGTGGAGGAGATTGAAAAGCAATAATA_-_ATGGATGGAGCGCCGTTTGCTGAAGGTTCATCAACATTTCCGTCAGCCATGGATATTATGCCAATCATGCACGATAGCGATCGATATGAGCTCGTTAAAGATATTGGGTCAGGCAATTTCGGTGTAGCGCGCTTAATGCGCGACAGACAGACCAGGGAACTCGTTGCTGTCAAATACATTGAGCGGGGCGAAAATATTGATGAAAACGTGAAAAGAGAGATCATCAATCACCGCTCGCTTCGCCATCCAAACATTATTCAATTCAAAGAGGTGATATTGACTCCGACCCATCTAGCAATTGTTATGGAATATGCTGCAGGGGGTGAGCTGTATGAACGCATTTGCAATGCAGGCCGTTTTAGGGAAGATGAGGCACGTTTTTTCTTTCAGCAACTTATTTCAGGTGTAAGCTATTTCCATTCTATGCAAGTCTGTCACCGTGATTTAAAGCTGGAAAATACTCTTTTGGATGGAAGTCCTGCACCTCGTCTCAAGATCTGTGATTTTGGCTATTCCAAGTCTTCTGTGCTTCATTCACAGCCCAACTCAACTGTTGGGACACCTGCATACATAGCTCCAGAAGTTTTGTCCAAGAAAGAATATGATGGAAAGATTGCAGATGTATGGTCGTGCGGTGTGACTCTTTATGTTATGCTTGTAGGAGCATATCCATTTGAGGATCCTGAGGAACCAAAGAATTTTCGCAAGACCATTGGCCGTATAATGAGTGCGCAATATTGCATACCAGATCACATTACATCCGAATGTCGGCACTTGCTTTCTAGAATTTTTGTTGCAAATCCTGTCATGCGAATAACAATGACTGAAATTCAGAATCACGAGTGGTTTTTGAAGAATTTGCCTGCAGACTTGTTGGATGCTCATACTAGCAATCAATACGATTGTGCAGACCAACCTGCACAGAGCACTGCCGAGATTATGAGAATTATTGATGAAGCAAAAATTCCTGCATTGGGGTCAGGGTTAGAGCAATATTTTGGAGATGGTCTTGATTCCGATGACATGGATCTGGATGATGACGCTGACCTCGATGATGATAGCAGTGGGGAGTCTGTTTATGCTATGTAA___GACCGTTTTTAGAGATTTTTCAGTGGATAGATGACATCTTTGATTTCTGCATAATAGGAGGATTTATAGAAGTTATTCCTCCCGTCTGCTGGCTTATCTCTGTGTGCCAAGGTATATAATTAACCGCTATATGTACTGGATTGGACTATGAAAGCACTAGCTTTGTCCAGTACAAGCAGCAGTAGCTGATGT

Fln Alignment:

Contig4052___MDGAPFAEGSSTFPSAMDIMPIMHDSDRYELVKDIGSGNFGVARLMRDRQTRELVAVKYIERGENIDENVKREIINHRSLRHPNIIQFKEVILTPTHLAIVMEYAAGGELYERICNAGRFREDEARFFFQQLISGVSYFHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPNSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIGRIMSAQYCIPD--HITSECRHLLSRIFVANPVMRITMTEIQNHEWFLKNLPADLLDAHTSNQYDCADQPAQSTAEIMRIIDEAKIPALGSGLEQYF
D5ACL3_________________MDRGPFAEGSSTFPSAMDIMPIMHDSDRYELVKDIGSGNFGVARLMRDRQTRDLVAVKYIERGENIDENVKREIINHRSLRHPNIIQFKEVILTPTHLAIVMEYAAGGELYERICNAGRFSEDEARFFFQQLISGVSYFHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPNSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIGRIMSAQYCIPDFVHITSECRHLLSRIFVANPIMRITMTEIQNHEWFLKNLPADLLDAHTSNQYDSADQPAQSTAEIMRIIDEAKIPALGSGLEQYF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
517	25	75			0.996473
520			25	75	0.996473
521		75	25		0.996473
1105	83		16		0.994512
1128		50		50	1.0
1161	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain