SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4045

Length: 255 nt

UniGene Fasta

>biog2_v2.0_unigene4045
TACATGGGTGAAGTACCAACATTTTGGTGCCTGCCACTCAAAAGGTTTGGATGGATCTTTATACTCTTCCTGTACCGGGTGGTAATGGCAAGACATGTGCTCAGATTTTTGAGGAAGCAGGTTGTGATACTCCAGCAAGTCCTAATTGTGGAGCTTGTCTAGGGGGTCCTCGAGATACATATGCCCGTATGAATGTACCTCAGGTATGCGTTTCAACTACAAATAGGAACTTTCCTGGGAGAATGGGTCATAAAG

Ace file of the UniGene biog2_v2.0_unigene4045

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6990	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	3-isopropylmalate dehydratase [Arabidopsis thaliana] sp\|Q94AR8.1\|LEUC_ARATH RecName: Full=3-isopropylmalate dehydratase; AltName: Full=Isopropylmalate isomerase large subunit 1; Short=AtIIL1; Flags: Precursor gb\|AAK76516.1\| unknown protein [Arabidopsis th	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	3-isopropylmalate dehydratase-like	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-isopropylmalate dehydratase.	EC:4.2.1.33	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	91%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	91%
Blast2go	3-isopropylmalate dehydratase activity	GO:0003861	Molecular Function	91%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	91%
Blast2go	plastid	GO:0009536	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	IPR015931	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha	IPR001030	-	-
Sma3	Aconitase/isopropylmalate dehydratase	IPR015937	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2	IPR015932	-	-
Sma3	Homoaconitase/3-isopropylmalate dehydratase, small/large subunit	IPR015936	-	-
Sma3	Homoaconitase/3-isopropylmalate dehydratase, large subunit	IPR006251	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRG9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 28 aas, your sequence is shorter than subject: 84 - 237

Fln protein: HG*STNILVPATQKVWMDLYTLPVPGGNGKTCAQIFEEAGCDTPASPNCGACLGGPRDTYARMNVPQVCVSTTNRNFPGRMGHK

Protein Length: 85

Fln nts: TACATGGGTGAAGTACCAACATTTTGGTGCCTGCCACTCAAAAGGTTTGGATGGATCTTTATACTCTTCCTGTACCGGGTGGTAATGGCAAGACATGTGCTCAGATTTTTGAGGAAGCAGGTTGTGATACTCCAGCAAGTCCTAATTGTGGAGCTTGTCTAGGGGGTCCTCGAGATACATATGCCCGTATGAATGTACCTCAGGTATGCGTTTCAACTACAAATAGGAACTTTCCTGGGAGAATGGGTCATAAAG

Fln Alignment:

Contig4045___LVPATQKVWMDLYTLPVPGGNGKTCAQIFEEAGCDTPASPNCGACLGGPRDTYARMNVPQVCVSTTNRNFPGRMGHK
C0PRG9_________________LVPATQKVWMDLYTLPVPGGNGKTCAQIFEEAGCDTPASPNCGACLGGPRDTYARMNVPQVCVSTTNRNFPGRMGHK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
55	25		75		0.996473
177		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain